miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24758 3' -58.9 NC_005264.1 + 58706 0.67 0.775113
Target:  5'- aCGGCCGCguuuaCUAGGCGG-GCGGCc -3'
miRNA:   3'- gGCUGGUGagg--GGUCUGCCaUGCCGc -5'
24758 3' -58.9 NC_005264.1 + 141485 0.67 0.775113
Target:  5'- aCCGGCCGaggcggCCCgGGACGa-ACGGCa -3'
miRNA:   3'- -GGCUGGUga----GGGgUCUGCcaUGCCGc -5'
24758 3' -58.9 NC_005264.1 + 82195 0.67 0.809853
Target:  5'- gCGGCCAUcguaUUAGACGGUaGCGGCGc -3'
miRNA:   3'- gGCUGGUGagg-GGUCUGCCA-UGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 80660 0.66 0.842232
Target:  5'- aCGGCCGCUCUUCaAGAgGGccAUGGCc -3'
miRNA:   3'- gGCUGGUGAGGGG-UCUgCCa-UGCCGc -5'
24758 3' -58.9 NC_005264.1 + 39069 0.7 0.602962
Target:  5'- gCGGuCCAC-CCCCGGACGccggcuCGGCGg -3'
miRNA:   3'- gGCU-GGUGaGGGGUCUGCcau---GCCGC- -5'
24758 3' -58.9 NC_005264.1 + 79415 0.68 0.729113
Target:  5'- -aGGCCGCggcggaaCCCAGcguggGCGGUGCGGgGu -3'
miRNA:   3'- ggCUGGUGag-----GGGUC-----UGCCAUGCCgC- -5'
24758 3' -58.9 NC_005264.1 + 69355 0.67 0.792749
Target:  5'- gCCGGCCGCcagcagcgCCUCAGACaGcGCGGUu -3'
miRNA:   3'- -GGCUGGUGa-------GGGGUCUGcCaUGCCGc -5'
24758 3' -58.9 NC_005264.1 + 14193 0.66 0.849905
Target:  5'- gCGAUCGCcgucgCCCCAu-CGGccACGGCGg -3'
miRNA:   3'- gGCUGGUGa----GGGGUcuGCCa-UGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 24377 0.68 0.7478
Target:  5'- aCCGGCUucgcgGCUCCCCcGGCGGcgaGGUa -3'
miRNA:   3'- -GGCUGG-----UGAGGGGuCUGCCaugCCGc -5'
24758 3' -58.9 NC_005264.1 + 112977 0.66 0.849905
Target:  5'- aUCGGuCagcaGCUCCgCCAGAaGGcUGCGGCGu -3'
miRNA:   3'- -GGCU-Gg---UGAGG-GGUCUgCC-AUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 159818 0.67 0.783993
Target:  5'- uCCGACCAUgaucggaCCCCAGAgccgagccgcCGGcccaguCGGCGc -3'
miRNA:   3'- -GGCUGGUGa------GGGGUCU----------GCCau----GCCGC- -5'
24758 3' -58.9 NC_005264.1 + 83283 0.68 0.757008
Target:  5'- uUCGGCCGCaaggCCUUgccGCGGUGCGGCc -3'
miRNA:   3'- -GGCUGGUGa---GGGGuc-UGCCAUGCCGc -5'
24758 3' -58.9 NC_005264.1 + 78699 0.67 0.792749
Target:  5'- gCGACCACUUCCCGGggcucGCGaGcUGCcGCGa -3'
miRNA:   3'- gGCUGGUGAGGGGUC-----UGC-C-AUGcCGC- -5'
24758 3' -58.9 NC_005264.1 + 58256 0.67 0.809853
Target:  5'- cUCGGCCcgaUCCCgUGGGCGGcAUGGCGc -3'
miRNA:   3'- -GGCUGGug-AGGG-GUCUGCCaUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 133035 0.67 0.818187
Target:  5'- -aGACC-CUUUCCGcGGCGGUGCGcGUGu -3'
miRNA:   3'- ggCUGGuGAGGGGU-CUGCCAUGC-CGC- -5'
24758 3' -58.9 NC_005264.1 + 4593 0.66 0.826366
Target:  5'- -aGGCC-CUCCCCGccaGCGccGCGGCGg -3'
miRNA:   3'- ggCUGGuGAGGGGUc--UGCcaUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 74246 0.71 0.573766
Target:  5'- gCUGGCCGCgCUCCAGacacgGCGGUAgaGGCGg -3'
miRNA:   3'- -GGCUGGUGaGGGGUC-----UGCCAUg-CCGC- -5'
24758 3' -58.9 NC_005264.1 + 144304 0.71 0.583468
Target:  5'- gCCGGCgCGC-CCUCAGGgGGagACGGCGc -3'
miRNA:   3'- -GGCUG-GUGaGGGGUCUgCCa-UGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 85075 0.7 0.622536
Target:  5'- gCGGCCGCgUCgUCAGAuuCGGaUACGGCGc -3'
miRNA:   3'- gGCUGGUG-AGgGGUCU--GCC-AUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 13427 0.68 0.71965
Target:  5'- gCGACCGCcgCCgCCgAGACGcgacGCGGCGg -3'
miRNA:   3'- gGCUGGUGa-GG-GG-UCUGCca--UGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.