miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24758 3' -58.9 NC_005264.1 + 3170 0.66 0.864703
Target:  5'- gCGACC-CUCCgCGucgcGACGGcGCGGgGa -3'
miRNA:   3'- gGCUGGuGAGGgGU----CUGCCaUGCCgC- -5'
24758 3' -58.9 NC_005264.1 + 52269 0.67 0.801371
Target:  5'- cCCGGCCACggcaUCUAcaauGCGGUACGcGCGa -3'
miRNA:   3'- -GGCUGGUGag--GGGUc---UGCCAUGC-CGC- -5'
24758 3' -58.9 NC_005264.1 + 69355 0.67 0.792749
Target:  5'- gCCGGCCGCcagcagcgCCUCAGACaGcGCGGUu -3'
miRNA:   3'- -GGCUGGUGa-------GGGGUCUGcCaUGCCGc -5'
24758 3' -58.9 NC_005264.1 + 41039 1.09 0.002123
Target:  5'- gCCGACCACUCCCCAGACGGUACGGCGc -3'
miRNA:   3'- -GGCUGGUGAGGGGUCUGCCAUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 26141 0.66 0.857398
Target:  5'- -gGGCCAUgaugUCCCAGGCc--GCGGCGa -3'
miRNA:   3'- ggCUGGUGa---GGGGUCUGccaUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 75404 0.66 0.849905
Target:  5'- aCCGuCUGCgcggCCgCGGGCaGuGUACGGCGg -3'
miRNA:   3'- -GGCuGGUGa---GGgGUCUG-C-CAUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 14193 0.66 0.849905
Target:  5'- gCGAUCGCcgucgCCCCAu-CGGccACGGCGg -3'
miRNA:   3'- gGCUGGUGa----GGGGUcuGCCa-UGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 80660 0.66 0.842232
Target:  5'- aCGGCCGCUCUUCaAGAgGGccAUGGCc -3'
miRNA:   3'- gGCUGGUGAGGGG-UCUgCCa-UGCCGc -5'
24758 3' -58.9 NC_005264.1 + 14437 0.67 0.818187
Target:  5'- gCGGCCugccCUCCCCAauaGGcAUGGCGg -3'
miRNA:   3'- gGCUGGu---GAGGGGUcugCCaUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 58256 0.67 0.809853
Target:  5'- cUCGGCCcgaUCCCgUGGGCGGcAUGGCGc -3'
miRNA:   3'- -GGCUGGug-AGGG-GUCUGCCaUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 134835 0.67 0.809853
Target:  5'- cCCGACCGa--CCUGGaucgaugggccGCGGcUACGGCGg -3'
miRNA:   3'- -GGCUGGUgagGGGUC-----------UGCC-AUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 105457 0.66 0.825556
Target:  5'- gUCGACCcgcgucagguaagACUCCCCuccagcGACG--ACGGCGa -3'
miRNA:   3'- -GGCUGG-------------UGAGGGGu-----CUGCcaUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 133361 0.66 0.857398
Target:  5'- gCGGCC-CUCCUC-GACGacuCGGCGa -3'
miRNA:   3'- gGCUGGuGAGGGGuCUGCcauGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 157663 0.67 0.809853
Target:  5'- uUCGGCCGCgagggCCUCcgaaaggcuucGGACGaUGCGGCGc -3'
miRNA:   3'- -GGCUGGUGa----GGGG-----------UCUGCcAUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 109916 0.66 0.857398
Target:  5'- gCGGCCAUgcaaugCCCCucgaaguGGCGGUucgccgaccuuACGGCc -3'
miRNA:   3'- gGCUGGUGa-----GGGGu------CUGCCA-----------UGCCGc -5'
24758 3' -58.9 NC_005264.1 + 4593 0.66 0.826366
Target:  5'- -aGGCC-CUCCCCGccaGCGccGCGGCGg -3'
miRNA:   3'- ggCUGGuGAGGGGUc--UGCcaUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 82195 0.67 0.809853
Target:  5'- gCGGCCAUcguaUUAGACGGUaGCGGCGc -3'
miRNA:   3'- gGCUGGUGagg-GGUCUGCCA-UGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 78699 0.67 0.792749
Target:  5'- gCGACCACUUCCCGGggcucGCGaGcUGCcGCGa -3'
miRNA:   3'- gGCUGGUGAGGGGUC-----UGC-C-AUGcCGC- -5'
24758 3' -58.9 NC_005264.1 + 146390 0.66 0.857398
Target:  5'- uUCGACCACguucacaCCCgCGGGCaGGccccGCGGCa -3'
miRNA:   3'- -GGCUGGUGa------GGG-GUCUG-CCa---UGCCGc -5'
24758 3' -58.9 NC_005264.1 + 112977 0.66 0.849905
Target:  5'- aUCGGuCagcaGCUCCgCCAGAaGGcUGCGGCGu -3'
miRNA:   3'- -GGCU-Gg---UGAGG-GGUCUgCC-AUGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.