miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24758 3' -58.9 NC_005264.1 + 2978 0.66 0.826366
Target:  5'- uCCGACCACgaaUCCAucgagcgccGACuGGgcCGGCGg -3'
miRNA:   3'- -GGCUGGUGag-GGGU---------CUG-CCauGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 77794 0.66 0.826366
Target:  5'- aCGcACCGCggCgCAGACGGcauugACGGCGc -3'
miRNA:   3'- gGC-UGGUGagGgGUCUGCCa----UGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 123620 0.66 0.826366
Target:  5'- -aGGCC-CUCCCCGccaGCGccGCGGCGg -3'
miRNA:   3'- ggCUGGuGAGGGGUc--UGCcaUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 105457 0.66 0.825556
Target:  5'- gUCGACCcgcgucagguaagACUCCCCuccagcGACG--ACGGCGa -3'
miRNA:   3'- -GGCUGG-------------UGAGGGGu-----CUGCcaUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 133035 0.67 0.818187
Target:  5'- -aGACC-CUUUCCGcGGCGGUGCGcGUGu -3'
miRNA:   3'- ggCUGGuGAGGGGU-CUGCCAUGC-CGC- -5'
24758 3' -58.9 NC_005264.1 + 14437 0.67 0.818187
Target:  5'- gCGGCCugccCUCCCCAauaGGcAUGGCGg -3'
miRNA:   3'- gGCUGGu---GAGGGGUcugCCaUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 134835 0.67 0.809853
Target:  5'- cCCGACCGa--CCUGGaucgaugggccGCGGcUACGGCGg -3'
miRNA:   3'- -GGCUGGUgagGGGUC-----------UGCC-AUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 157663 0.67 0.809853
Target:  5'- uUCGGCCGCgagggCCUCcgaaaggcuucGGACGaUGCGGCGc -3'
miRNA:   3'- -GGCUGGUGa----GGGG-----------UCUGCcAUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 82195 0.67 0.809853
Target:  5'- gCGGCCAUcguaUUAGACGGUaGCGGCGc -3'
miRNA:   3'- gGCUGGUGagg-GGUCUGCCA-UGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 58256 0.67 0.809853
Target:  5'- cUCGGCCcgaUCCCgUGGGCGGcAUGGCGc -3'
miRNA:   3'- -GGCUGGug-AGGG-GUCUGCCaUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 75302 0.67 0.809853
Target:  5'- gCgGACgACUCCUCGGaggccGCGG-GCGGCu -3'
miRNA:   3'- -GgCUGgUGAGGGGUC-----UGCCaUGCCGc -5'
24758 3' -58.9 NC_005264.1 + 40083 0.67 0.809853
Target:  5'- cCCGAgCGCUUCgUAGAcuCGGUccuCGGCGu -3'
miRNA:   3'- -GGCUgGUGAGGgGUCU--GCCAu--GCCGC- -5'
24758 3' -58.9 NC_005264.1 + 36625 0.67 0.809853
Target:  5'- cCCGAUCACagauuggCCCCGGAgcgaugaguuCGGUaagccaaccuGCGGCu -3'
miRNA:   3'- -GGCUGGUGa------GGGGUCU----------GCCA----------UGCCGc -5'
24758 3' -58.9 NC_005264.1 + 52269 0.67 0.801371
Target:  5'- cCCGGCCACggcaUCUAcaauGCGGUACGcGCGa -3'
miRNA:   3'- -GGCUGGUGag--GGGUc---UGCCAUGC-CGC- -5'
24758 3' -58.9 NC_005264.1 + 78699 0.67 0.792749
Target:  5'- gCGACCACUUCCCGGggcucGCGaGcUGCcGCGa -3'
miRNA:   3'- gGCUGGUGAGGGGUC-----UGC-C-AUGcCGC- -5'
24758 3' -58.9 NC_005264.1 + 69355 0.67 0.792749
Target:  5'- gCCGGCCGCcagcagcgCCUCAGACaGcGCGGUu -3'
miRNA:   3'- -GGCUGGUGa-------GGGGUCUGcCaUGCCGc -5'
24758 3' -58.9 NC_005264.1 + 159818 0.67 0.783993
Target:  5'- uCCGACCAUgaucggaCCCCAGAgccgagccgcCGGcccaguCGGCGc -3'
miRNA:   3'- -GGCUGGUGa------GGGGUCU----------GCCau----GCCGC- -5'
24758 3' -58.9 NC_005264.1 + 141485 0.67 0.775113
Target:  5'- aCCGGCCGaggcggCCCgGGACGa-ACGGCa -3'
miRNA:   3'- -GGCUGGUga----GGGgUCUGCcaUGCCGc -5'
24758 3' -58.9 NC_005264.1 + 58706 0.67 0.775113
Target:  5'- aCGGCCGCguuuaCUAGGCGG-GCGGCc -3'
miRNA:   3'- gGCUGGUGagg--GGUCUGCCaUGCCGc -5'
24758 3' -58.9 NC_005264.1 + 77404 0.67 0.775113
Target:  5'- gCCGGCaagCGCUCCCUguccgcGCGGU-CGGCGu -3'
miRNA:   3'- -GGCUG---GUGAGGGGuc----UGCCAuGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.