miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24758 3' -58.9 NC_005264.1 + 83283 0.68 0.757008
Target:  5'- uUCGGCCGCaaggCCUUgccGCGGUGCGGCc -3'
miRNA:   3'- -GGCUGGUGa---GGGGuc-UGCCAUGCCGc -5'
24758 3' -58.9 NC_005264.1 + 146573 0.68 0.757008
Target:  5'- uCUGGCCGCgCCUCAGGCGauGUGuCGGUa -3'
miRNA:   3'- -GGCUGGUGaGGGGUCUGC--CAU-GCCGc -5'
24758 3' -58.9 NC_005264.1 + 60813 0.68 0.757008
Target:  5'- aCGACCGguUUCCCguguuuuGugGGUACGGUa -3'
miRNA:   3'- gGCUGGU--GAGGGgu-----CugCCAUGCCGc -5'
24758 3' -58.9 NC_005264.1 + 24377 0.68 0.7478
Target:  5'- aCCGGCUucgcgGCUCCCCcGGCGGcgaGGUa -3'
miRNA:   3'- -GGCUGG-----UGAGGGGuCUGCCaugCCGc -5'
24758 3' -58.9 NC_005264.1 + 79415 0.68 0.729113
Target:  5'- -aGGCCGCggcggaaCCCAGcguggGCGGUGCGGgGu -3'
miRNA:   3'- ggCUGGUGag-----GGGUC-----UGCCAUGCCgC- -5'
24758 3' -58.9 NC_005264.1 + 13427 0.68 0.71965
Target:  5'- gCGACCGCcgCCgCCgAGACGcgacGCGGCGg -3'
miRNA:   3'- gGCUGGUGa-GG-GG-UCUGCca--UGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 132454 0.68 0.71965
Target:  5'- gCGACCGCcgCCgCCgAGACGcgacGCGGCGg -3'
miRNA:   3'- gGCUGGUGa-GG-GG-UCUGCca--UGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 87375 0.68 0.71965
Target:  5'- aCUGGCCA--CCCCAGGCGGacuuUGgGGCc -3'
miRNA:   3'- -GGCUGGUgaGGGGUCUGCC----AUgCCGc -5'
24758 3' -58.9 NC_005264.1 + 43042 0.68 0.71965
Target:  5'- gCGACCAUUCCCCcgccGACuGUcGCGGUc -3'
miRNA:   3'- gGCUGGUGAGGGGu---CUGcCA-UGCCGc -5'
24758 3' -58.9 NC_005264.1 + 51868 0.68 0.71965
Target:  5'- -aGACgGuCUCCUCGGGCGaG-ACGGCGg -3'
miRNA:   3'- ggCUGgU-GAGGGGUCUGC-CaUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 125476 0.7 0.651928
Target:  5'- gCUGGCggagaACUCCUCGG-CGGcGCGGCGa -3'
miRNA:   3'- -GGCUGg----UGAGGGGUCuGCCaUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 6449 0.7 0.651928
Target:  5'- gCUGGCggagaACUCCUCGG-CGGcGCGGCGa -3'
miRNA:   3'- -GGCUGg----UGAGGGGUCuGCCaUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 94592 0.7 0.636256
Target:  5'- -aGGCCGC-CCgCGGcgcgggcauggcuugGCGGUGCGGCGu -3'
miRNA:   3'- ggCUGGUGaGGgGUC---------------UGCCAUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 85075 0.7 0.622536
Target:  5'- gCGGCCGCgUCgUCAGAuuCGGaUACGGCGc -3'
miRNA:   3'- gGCUGGUG-AGgGGUCU--GCC-AUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 155868 0.7 0.603939
Target:  5'- cCCGcGCCaACUCUCaucaucacuucaguGACGGUGCGGCGc -3'
miRNA:   3'- -GGC-UGG-UGAGGGgu------------CUGCCAUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 158096 0.7 0.602962
Target:  5'- gCGGuCCAC-CCCCGGACGccggcuCGGCGg -3'
miRNA:   3'- gGCU-GGUGaGGGGUCUGCcau---GCCGC- -5'
24758 3' -58.9 NC_005264.1 + 82968 0.7 0.602962
Target:  5'- gCCG-CCGCgcCCCCGuGACgaaGGUACGGUGa -3'
miRNA:   3'- -GGCuGGUGa-GGGGU-CUG---CCAUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 152751 0.7 0.602962
Target:  5'- aCGGCCGCgaugCCCCcGGCGGgagauuccgccGCGGCu -3'
miRNA:   3'- gGCUGGUGa---GGGGuCUGCCa----------UGCCGc -5'
24758 3' -58.9 NC_005264.1 + 39069 0.7 0.602962
Target:  5'- gCGGuCCAC-CCCCGGACGccggcuCGGCGg -3'
miRNA:   3'- gGCU-GGUGaGGGGUCUGCcau---GCCGC- -5'
24758 3' -58.9 NC_005264.1 + 144304 0.71 0.583468
Target:  5'- gCCGGCgCGC-CCUCAGGgGGagACGGCGc -3'
miRNA:   3'- -GGCUG-GUGaGGGGUCUgCCa-UGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.