miRNA display CGI


Results 41 - 60 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24758 5' -52.2 NC_005264.1 + 119256 0.67 0.98079
Target:  5'- uCGCuuuCCGU---GCCUGGcgccacagcGAGGCGGGCc -3'
miRNA:   3'- -GCGc--GGCAuuaUGGAUC---------UUCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 9657 0.67 0.98079
Target:  5'- aGUGCagauCGUcuagcgagGCCUuggGGGAGGCGGGCu -3'
miRNA:   3'- gCGCG----GCAuua-----UGGA---UCUUCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 111072 0.67 0.98079
Target:  5'- uCGCGCCGggcGAUugcaucucGCuCUcaGAGAUGGGCu -3'
miRNA:   3'- -GCGCGGCa--UUA--------UG-GAucUUCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 123225 0.67 0.98079
Target:  5'- aGCGCCGUG---UCUAGGAGcaaGCGcGCa -3'
miRNA:   3'- gCGCGGCAUuauGGAUCUUC---UGCcCG- -5'
24758 5' -52.2 NC_005264.1 + 229 0.67 0.98079
Target:  5'- uCGCuuuCCGU---GCCUGGcgccacagcGAGGCGGGCc -3'
miRNA:   3'- -GCGc--GGCAuuaUGGAUC---------UUCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 5044 0.67 0.980575
Target:  5'- cCGCGUCGUGGgcgccGCCUagcugGGAAGACgccgauggaacguGGGUu -3'
miRNA:   3'- -GCGCGGCAUUa----UGGA-----UCUUCUG-------------CCCG- -5'
24758 5' -52.2 NC_005264.1 + 22068 0.67 0.978559
Target:  5'- aGCGCCGcc--GCC-GGAAGGCGGuucuuGCa -3'
miRNA:   3'- gCGCGGCauuaUGGaUCUUCUGCC-----CG- -5'
24758 5' -52.2 NC_005264.1 + 121543 0.67 0.976141
Target:  5'- gCGgGCCGaUA--GCgUGGAAGucgacGCGGGCg -3'
miRNA:   3'- -GCgCGGC-AUuaUGgAUCUUC-----UGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 95461 0.67 0.976141
Target:  5'- cCGCGCCGgcGggcGCagcGAGcGCGGGCg -3'
miRNA:   3'- -GCGCGGCauUa--UGgauCUUcUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 74794 0.67 0.975378
Target:  5'- gGCGcCCGUAuugACCUGuacgcuucggccccGAGGAacgUGGGCa -3'
miRNA:   3'- gCGC-GGCAUua-UGGAU--------------CUUCU---GCCCG- -5'
24758 5' -52.2 NC_005264.1 + 54135 0.67 0.97512
Target:  5'- gCGCGCCGgggucGGUGCCgacuacaucGACGGuGCg -3'
miRNA:   3'- -GCGCGGCa----UUAUGGaucuu----CUGCC-CG- -5'
24758 5' -52.2 NC_005264.1 + 94543 0.67 0.973529
Target:  5'- gGCGCCGcacugagaAAUGCCgcuGggGACGcaaagaGGCg -3'
miRNA:   3'- gCGCGGCa-------UUAUGGau-CuuCUGC------CCG- -5'
24758 5' -52.2 NC_005264.1 + 144300 0.67 0.973529
Target:  5'- uGaCGCCGgcGcGCCcucaggGGGAGACGGcGCc -3'
miRNA:   3'- gC-GCGGCauUaUGGa-----UCUUCUGCC-CG- -5'
24758 5' -52.2 NC_005264.1 + 77758 0.67 0.973529
Target:  5'- gGCGCCGUAu--CCgaaucuGAcGACGcGGCc -3'
miRNA:   3'- gCGCGGCAUuauGGau----CUuCUGC-CCG- -5'
24758 5' -52.2 NC_005264.1 + 146344 0.67 0.973529
Target:  5'- uGCGCCGgcGUGCCUcGAccccGCaGGCc -3'
miRNA:   3'- gCGCGGCauUAUGGAuCUuc--UGcCCG- -5'
24758 5' -52.2 NC_005264.1 + 3706 0.67 0.973529
Target:  5'- gGCGCacaGUAcuUGCCgc--GGGCGGGCu -3'
miRNA:   3'- gCGCGg--CAUu-AUGGaucuUCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 18531 0.67 0.973529
Target:  5'- gGCGCCGUcucccCCU-GAGGGCGcgccGGCg -3'
miRNA:   3'- gCGCGGCAuuau-GGAuCUUCUGC----CCG- -5'
24758 5' -52.2 NC_005264.1 + 85037 0.68 0.971866
Target:  5'- cCGCGCCGUcAAUGCCgucugcgccGCGGuGCg -3'
miRNA:   3'- -GCGCGGCA-UUAUGGaucuuc---UGCC-CG- -5'
24758 5' -52.2 NC_005264.1 + 121431 0.68 0.970717
Target:  5'- gGCGCCGgccUGCCUAGgAAGAaagcgGaGGCc -3'
miRNA:   3'- gCGCGGCauuAUGGAUC-UUCUg----C-CCG- -5'
24758 5' -52.2 NC_005264.1 + 93508 0.68 0.970717
Target:  5'- gCGCGUCGUucccuucggACCUGaacGAAGACGaaaaGGCg -3'
miRNA:   3'- -GCGCGGCAuua------UGGAU---CUUCUGC----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.