miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24758 5' -52.2 NC_005264.1 + 36152 0.66 0.988017
Target:  5'- aGCGCUGUGcgAgCUcgGGAAgcgcGACGGGa -3'
miRNA:   3'- gCGCGGCAUuaUgGA--UCUU----CUGCCCg -5'
24758 5' -52.2 NC_005264.1 + 47776 0.66 0.987562
Target:  5'- gGUGCCGaug-GCCUGcacGAAGACcucggcuuucgccgGGGCg -3'
miRNA:   3'- gCGCGGCauuaUGGAU---CUUCUG--------------CCCG- -5'
24758 5' -52.2 NC_005264.1 + 91415 0.66 0.987562
Target:  5'- aGCGCCGggGcACCggcGGAGucugugucauagccACGGGCc -3'
miRNA:   3'- gCGCGGCauUaUGGau-CUUC--------------UGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 45743 0.66 0.987408
Target:  5'- gCGCGCgGUcGUGCCguaucuagcacacAGAcagcGAUGGGCg -3'
miRNA:   3'- -GCGCGgCAuUAUGGa------------UCUu---CUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 85451 0.66 0.986449
Target:  5'- gCGgGCCGgc---CCUGGAAcuccuuACGGGCg -3'
miRNA:   3'- -GCgCGGCauuauGGAUCUUc-----UGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 125715 0.66 0.986449
Target:  5'- gGCGCC-UGGUGCCccugUGGAAcGAguaguUGGGCg -3'
miRNA:   3'- gCGCGGcAUUAUGG----AUCUU-CU-----GCCCG- -5'
24758 5' -52.2 NC_005264.1 + 54424 0.66 0.986449
Target:  5'- gCGCGCCGa-----CUAGGGcGugGGGUu -3'
miRNA:   3'- -GCGCGGCauuaugGAUCUU-CugCCCG- -5'
24758 5' -52.2 NC_005264.1 + 100939 0.66 0.985949
Target:  5'- gCGCGCCGUGAUagacggcaggauucAgCUAGGgcucAGGCuGGUg -3'
miRNA:   3'- -GCGCGGCAUUA--------------UgGAUCU----UCUGcCCG- -5'
24758 5' -52.2 NC_005264.1 + 162237 0.66 0.984727
Target:  5'- aCGCcaCCGUAGUcGCCUcgcugccGGAGuCGGGCg -3'
miRNA:   3'- -GCGc-GGCAUUA-UGGAu------CUUCuGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 22819 0.66 0.984727
Target:  5'- -cCGuuGUGGUacaGCCUcAGcGAGACGGGUa -3'
miRNA:   3'- gcGCggCAUUA---UGGA-UC-UUCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 41349 0.66 0.984727
Target:  5'- aGCaGCCGcgAAgGCCcagcuccgGGAAGAaCGGGCa -3'
miRNA:   3'- gCG-CGGCa-UUaUGGa-------UCUUCU-GCCCG- -5'
24758 5' -52.2 NC_005264.1 + 160376 0.66 0.984727
Target:  5'- aGCaGCCGcgAAgGCCcagcuccgGGAAGAaCGGGCa -3'
miRNA:   3'- gCG-CGGCa-UUaUGGa-------UCUUCU-GCCCG- -5'
24758 5' -52.2 NC_005264.1 + 46734 0.66 0.984727
Target:  5'- aGCGCUaugucuggcauGUAcaucuGUACCgGGuAGAUGGGCa -3'
miRNA:   3'- gCGCGG-----------CAU-----UAUGGaUCuUCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 148392 0.67 0.982844
Target:  5'- gGCuuGCCGccAUGCCUAuuGggGA-GGGCa -3'
miRNA:   3'- gCG--CGGCauUAUGGAU--CuuCUgCCCG- -5'
24758 5' -52.2 NC_005264.1 + 23054 0.67 0.982844
Target:  5'- aCGCGuUCGUGcuugcuugggGUACC-GGGAGACGccGGCa -3'
miRNA:   3'- -GCGC-GGCAU----------UAUGGaUCUUCUGC--CCG- -5'
24758 5' -52.2 NC_005264.1 + 49479 0.67 0.982844
Target:  5'- cCGCGCCGUAu--UC-----GACGGGCa -3'
miRNA:   3'- -GCGCGGCAUuauGGaucuuCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 124735 0.67 0.981004
Target:  5'- uCGCGCUGUAAaauuuuucccgggggGCCaAGGAagcacGGCGGGUa -3'
miRNA:   3'- -GCGCGGCAUUa--------------UGGaUCUU-----CUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 60402 0.67 0.98079
Target:  5'- gGCGgCGUGAaggGCCaGGAaccacuuggGGACGGGg -3'
miRNA:   3'- gCGCgGCAUUa--UGGaUCU---------UCUGCCCg -5'
24758 5' -52.2 NC_005264.1 + 119256 0.67 0.98079
Target:  5'- uCGCuuuCCGU---GCCUGGcgccacagcGAGGCGGGCc -3'
miRNA:   3'- -GCGc--GGCAuuaUGGAUC---------UUCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 17796 0.67 0.98079
Target:  5'- aGCGCCaaGGUACCUGGcgguAGGCccuGGCc -3'
miRNA:   3'- gCGCGGcaUUAUGGAUCu---UCUGc--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.