miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24758 5' -52.2 NC_005264.1 + 74133 0.72 0.842095
Target:  5'- cCGCGaCCGUuAUGuCCUAGAagcagugaaGGACGGuGCc -3'
miRNA:   3'- -GCGC-GGCAuUAU-GGAUCU---------UCUGCC-CG- -5'
24758 5' -52.2 NC_005264.1 + 93231 0.72 0.842095
Target:  5'- uCGCGCCacgaucguGUAAUACC-AGcAAG-CGGGCu -3'
miRNA:   3'- -GCGCGG--------CAUUAUGGaUC-UUCuGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 100202 0.72 0.850215
Target:  5'- gCGUGCUGc---GCUUGGAcGGCGGGCg -3'
miRNA:   3'- -GCGCGGCauuaUGGAUCUuCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 159404 0.72 0.850215
Target:  5'- gGCGgCGg---ACCccugAGAAGugGGGCg -3'
miRNA:   3'- gCGCgGCauuaUGGa---UCUUCugCCCG- -5'
24758 5' -52.2 NC_005264.1 + 27976 0.72 0.86124
Target:  5'- gCGCGcCCGUGGUAUCUgaccgAGAAGGCGccaugauuacuuucuGGCu -3'
miRNA:   3'- -GCGC-GGCAUUAUGGA-----UCUUCUGC---------------CCG- -5'
24758 5' -52.2 NC_005264.1 + 16028 0.71 0.873329
Target:  5'- cCGCGCCuccGUGCagucgagGGAAGACGGGa -3'
miRNA:   3'- -GCGCGGcauUAUGga-----UCUUCUGCCCg -5'
24758 5' -52.2 NC_005264.1 + 13889 0.71 0.873329
Target:  5'- aCGCGUCGUc--GCCUgcAGgcGACGGGg -3'
miRNA:   3'- -GCGCGGCAuuaUGGA--UCuuCUGCCCg -5'
24758 5' -52.2 NC_005264.1 + 38344 0.71 0.880598
Target:  5'- --gGCCGUGAUG-CUGGgcGGCGGGg -3'
miRNA:   3'- gcgCGGCAUUAUgGAUCuuCUGCCCg -5'
24758 5' -52.2 NC_005264.1 + 157371 0.71 0.880598
Target:  5'- --gGCCGUGAUG-CUGGgcGGCGGGg -3'
miRNA:   3'- gcgCGGCAUUAUgGAUCuuCUGCCCg -5'
24758 5' -52.2 NC_005264.1 + 69717 0.71 0.880598
Target:  5'- gGCGCCaucGUGA-ACCgcgGGAGcGCGGGCa -3'
miRNA:   3'- gCGCGG---CAUUaUGGa--UCUUcUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 17855 0.71 0.88764
Target:  5'- gCGCGCUGUucgACCgcguGAGcaaucGGCGGGCu -3'
miRNA:   3'- -GCGCGGCAuuaUGGau--CUU-----CUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 35957 0.71 0.88764
Target:  5'- uCGCGCCGacGAUggcgauucGCCUGGAGG--GGGCg -3'
miRNA:   3'- -GCGCGGCa-UUA--------UGGAUCUUCugCCCG- -5'
24758 5' -52.2 NC_005264.1 + 53113 0.71 0.89445
Target:  5'- gGCGCuCGgcgAGgggGCCgAGGAGGcCGGGCa -3'
miRNA:   3'- gCGCG-GCa--UUa--UGGaUCUUCU-GCCCG- -5'
24758 5' -52.2 NC_005264.1 + 3279 0.7 0.901025
Target:  5'- aGCGCCac-GUcCCUGGgcGACGGGg -3'
miRNA:   3'- gCGCGGcauUAuGGAUCuuCUGCCCg -5'
24758 5' -52.2 NC_005264.1 + 122306 0.7 0.901025
Target:  5'- aGCGCCac-GUcCCUGGgcGACGGGg -3'
miRNA:   3'- gCGCGGcauUAuGGAUCuuCUGCCCg -5'
24758 5' -52.2 NC_005264.1 + 30900 0.7 0.907361
Target:  5'- aCGCGUCGgggGAggACUgcGAGGcCGGGCg -3'
miRNA:   3'- -GCGCGGCa--UUa-UGGauCUUCuGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 149926 0.7 0.907361
Target:  5'- aCGCGUCGgggGAggACUgcGAGGcCGGGCg -3'
miRNA:   3'- -GCGCGGCa--UUa-UGGauCUUCuGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 43124 0.7 0.907361
Target:  5'- aCGCGCgGU---GCCUGGAcaccuaAGcACGGGUg -3'
miRNA:   3'- -GCGCGgCAuuaUGGAUCU------UC-UGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 162151 0.7 0.907361
Target:  5'- aCGCGCgGU---GCCUGGAcaccuaAGcACGGGUg -3'
miRNA:   3'- -GCGCGgCAuuaUGGAUCU------UC-UGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 131974 0.7 0.913454
Target:  5'- aGaCGCCGU--UGCCUAccGGGCGGcGCg -3'
miRNA:   3'- gC-GCGGCAuuAUGGAUcuUCUGCC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.