miRNA display CGI


Results 21 - 40 of 140 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24758 5' -52.2 NC_005264.1 + 18531 0.67 0.973529
Target:  5'- gGCGCCGUcucccCCU-GAGGGCGcgccGGCg -3'
miRNA:   3'- gCGCGGCAuuau-GGAuCUUCUGC----CCG- -5'
24758 5' -52.2 NC_005264.1 + 19426 0.72 0.842095
Target:  5'- gGCGCCGggugugGCCgcGggGcGCGGGUg -3'
miRNA:   3'- gCGCGGCauua--UGGauCuuC-UGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 19921 0.73 0.770758
Target:  5'- gGCGCCGUGccaGUACCUcGAGGACGc-- -3'
miRNA:   3'- gCGCGGCAU---UAUGGAuCUUCUGCccg -5'
24758 5' -52.2 NC_005264.1 + 19949 0.68 0.967696
Target:  5'- uCGuCGCCGUGAUGg--AGAAaGGCGcGGCg -3'
miRNA:   3'- -GC-GCGGCAUUAUggaUCUU-CUGC-CCG- -5'
24758 5' -52.2 NC_005264.1 + 22068 0.67 0.978559
Target:  5'- aGCGCCGcc--GCC-GGAAGGCGGuucuuGCa -3'
miRNA:   3'- gCGCGGCauuaUGGaUCUUCUGCC-----CG- -5'
24758 5' -52.2 NC_005264.1 + 22819 0.66 0.984727
Target:  5'- -cCGuuGUGGUacaGCCUcAGcGAGACGGGUa -3'
miRNA:   3'- gcGCggCAUUA---UGGA-UC-UUCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 23054 0.67 0.982844
Target:  5'- aCGCGuUCGUGcuugcuugggGUACC-GGGAGACGccGGCa -3'
miRNA:   3'- -GCGC-GGCAU----------UAUGGaUCUUCUGC--CCG- -5'
24758 5' -52.2 NC_005264.1 + 25604 0.66 0.988017
Target:  5'- aGCGCCGg---GCCggcguugcGGAacacggcggcGGugGGGCc -3'
miRNA:   3'- gCGCGGCauuaUGGa-------UCU----------UCugCCCG- -5'
24758 5' -52.2 NC_005264.1 + 26406 0.66 0.990852
Target:  5'- aGCGCCcaugcucuuccGCCUcAGAcuacgagaccgcGGACGGGCg -3'
miRNA:   3'- gCGCGGcauua------UGGA-UCU------------UCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 27976 0.72 0.86124
Target:  5'- gCGCGcCCGUGGUAUCUgaccgAGAAGGCGccaugauuacuuucuGGCu -3'
miRNA:   3'- -GCGC-GGCAUUAUGGA-----UCUUCUGC---------------CCG- -5'
24758 5' -52.2 NC_005264.1 + 30900 0.7 0.907361
Target:  5'- aCGCGUCGgggGAggACUgcGAGGcCGGGCg -3'
miRNA:   3'- -GCGCGGCa--UUa-UGGauCUUCuGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 31102 0.66 0.989442
Target:  5'- cCGgGCCGcGGU-CCUAGGauccGGuccCGGGCg -3'
miRNA:   3'- -GCgCGGCaUUAuGGAUCU----UCu--GCCCG- -5'
24758 5' -52.2 NC_005264.1 + 31173 0.66 0.99073
Target:  5'- aCGUGCCGccaacgGUCUGGc-GGCGGGCa -3'
miRNA:   3'- -GCGCGGCauua--UGGAUCuuCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 33891 0.66 0.988017
Target:  5'- gGCGgCGgugGAacuCCUAGAAGACauGGCg -3'
miRNA:   3'- gCGCgGCa--UUau-GGAUCUUCUGc-CCG- -5'
24758 5' -52.2 NC_005264.1 + 35531 0.66 0.989442
Target:  5'- gGCGCgGcGAaACCUauaGGGcguAGugGGGCa -3'
miRNA:   3'- gCGCGgCaUUaUGGA---UCU---UCugCCCG- -5'
24758 5' -52.2 NC_005264.1 + 35789 0.72 0.842095
Target:  5'- gGCGCgGUGGcGCCgucguGGCGGGCg -3'
miRNA:   3'- gCGCGgCAUUaUGGaucuuCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 35957 0.71 0.88764
Target:  5'- uCGCGCCGacGAUggcgauucGCCUGGAGG--GGGCg -3'
miRNA:   3'- -GCGCGGCa-UUA--------UGGAUCUUCugCCCG- -5'
24758 5' -52.2 NC_005264.1 + 36152 0.66 0.988017
Target:  5'- aGCGCUGUGcgAgCUcgGGAAgcgcGACGGGa -3'
miRNA:   3'- gCGCGGCAUuaUgGA--UCUU----CUGCCCg -5'
24758 5' -52.2 NC_005264.1 + 36509 0.68 0.953411
Target:  5'- aGCGCgCG----GCCUcGAcgAGGCGGGCg -3'
miRNA:   3'- gCGCG-GCauuaUGGAuCU--UCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 38178 0.68 0.961005
Target:  5'- cCGCGCUGUGGggacACCUAGcgucGCGcGGCc -3'
miRNA:   3'- -GCGCGGCAUUa---UGGAUCuuc-UGC-CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.