miRNA display CGI


Results 1 - 20 of 140 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24758 5' -52.2 NC_005264.1 + 229 0.67 0.98079
Target:  5'- uCGCuuuCCGU---GCCUGGcgccacagcGAGGCGGGCc -3'
miRNA:   3'- -GCGc--GGCAuuaUGGAUC---------UUCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 1539 0.66 0.99073
Target:  5'- cCGCGgCGUug-ACCgcgccGGcaauAGGCGGGCc -3'
miRNA:   3'- -GCGCgGCAuuaUGGa----UCu---UCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 2404 0.68 0.970717
Target:  5'- gGCGCCGgccUGCCUAGgAAGAaagcgGaGGCc -3'
miRNA:   3'- gCGCGGCauuAUGGAUC-UUCUg----C-CCG- -5'
24758 5' -52.2 NC_005264.1 + 2770 0.68 0.953411
Target:  5'- gGCGCCGU---ACCgucugGGGAGugGucGGCc -3'
miRNA:   3'- gCGCGGCAuuaUGGa----UCUUCugC--CCG- -5'
24758 5' -52.2 NC_005264.1 + 3203 0.68 0.967696
Target:  5'- cCGCGUuccugucuucgCGUAGccACCUAGGcugAGACGGuGCg -3'
miRNA:   3'- -GCGCG-----------GCAUUa-UGGAUCU---UCUGCC-CG- -5'
24758 5' -52.2 NC_005264.1 + 3279 0.7 0.901025
Target:  5'- aGCGCCac-GUcCCUGGgcGACGGGg -3'
miRNA:   3'- gCGCGGcauUAuGGAUCuuCUGCCCg -5'
24758 5' -52.2 NC_005264.1 + 3610 0.75 0.711681
Target:  5'- -cCGCCGcGGgggGCCgcGAGGGCGGGCg -3'
miRNA:   3'- gcGCGGCaUUa--UGGauCUUCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 3623 0.66 0.988166
Target:  5'- gGCGCUGUGGgcgggguggggguuUCUGGGAGGCgguuugagcuggGGGCg -3'
miRNA:   3'- gCGCGGCAUUau------------GGAUCUUCUG------------CCCG- -5'
24758 5' -52.2 NC_005264.1 + 3706 0.67 0.973529
Target:  5'- gGCGCacaGUAcuUGCCgc--GGGCGGGCu -3'
miRNA:   3'- gCGCGg--CAUu-AUGGaucuUCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 5009 0.69 0.94488
Target:  5'- cCGCGCCGggGUcGCCgcGGAguacgucaccgGGACGaGGCa -3'
miRNA:   3'- -GCGCGGCauUA-UGGa-UCU-----------UCUGC-CCG- -5'
24758 5' -52.2 NC_005264.1 + 5044 0.67 0.980575
Target:  5'- cCGCGUCGUGGgcgccGCCUagcugGGAAGACgccgauggaacguGGGUu -3'
miRNA:   3'- -GCGCGGCAUUa----UGGA-----UCUUCUG-------------CCCG- -5'
24758 5' -52.2 NC_005264.1 + 9657 0.67 0.98079
Target:  5'- aGUGCagauCGUcuagcgagGCCUuggGGGAGGCGGGCu -3'
miRNA:   3'- gCGCG----GCAuua-----UGGA---UCUUCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 12277 0.66 0.99073
Target:  5'- aCGaUGCCGUAc--CCUGGcggcAGGGCGGuGCg -3'
miRNA:   3'- -GC-GCGGCAUuauGGAUC----UUCUGCC-CG- -5'
24758 5' -52.2 NC_005264.1 + 12948 0.7 0.913454
Target:  5'- aGaCGCCGU--UGCCUAccGGGCGGcGCg -3'
miRNA:   3'- gC-GCGGCAuuAUGGAUcuUCUGCC-CG- -5'
24758 5' -52.2 NC_005264.1 + 13889 0.71 0.873329
Target:  5'- aCGCGUCGUc--GCCUgcAGgcGACGGGg -3'
miRNA:   3'- -GCGCGGCAuuaUGGA--UCuuCUGCCCg -5'
24758 5' -52.2 NC_005264.1 + 16028 0.71 0.873329
Target:  5'- cCGCGCCuccGUGCagucgagGGAAGACGGGa -3'
miRNA:   3'- -GCGCGGcauUAUGga-----UCUUCUGCCCg -5'
24758 5' -52.2 NC_005264.1 + 16560 0.68 0.967696
Target:  5'- aGCGCgGUGGgcggcGCCgGGgcGGCGGcGCa -3'
miRNA:   3'- gCGCGgCAUUa----UGGaUCuuCUGCC-CG- -5'
24758 5' -52.2 NC_005264.1 + 17796 0.67 0.98079
Target:  5'- aGCGCCaaGGUACCUGGcgguAGGCccuGGCc -3'
miRNA:   3'- gCGCGGcaUUAUGGAUCu---UCUGc--CCG- -5'
24758 5' -52.2 NC_005264.1 + 17855 0.71 0.88764
Target:  5'- gCGCGCUGUucgACCgcguGAGcaaucGGCGGGCu -3'
miRNA:   3'- -GCGCGGCAuuaUGGau--CUU-----CUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 18060 0.69 0.94488
Target:  5'- gGCGCCGcGA-GCCaGGgcGcGCGGGCa -3'
miRNA:   3'- gCGCGGCaUUaUGGaUCuuC-UGCCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.