miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24758 5' -52.2 NC_005264.1 + 162701 0.7 0.924361
Target:  5'- gCGCGCCGgcGUuaaggcgGCCgccgGGGAG-CGGGa -3'
miRNA:   3'- -GCGCGGCauUA-------UGGa---UCUUCuGCCCg -5'
24758 5' -52.2 NC_005264.1 + 162237 0.66 0.984727
Target:  5'- aCGCcaCCGUAGUcGCCUcgcugccGGAGuCGGGCg -3'
miRNA:   3'- -GCGc-GGCAUUA-UGGAu------CUUCuGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 162151 0.7 0.907361
Target:  5'- aCGCGCgGU---GCCUGGAcaccuaAGcACGGGUg -3'
miRNA:   3'- -GCGCGgCAuuaUGGAUCU------UC-UGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 160376 0.66 0.984727
Target:  5'- aGCaGCCGcgAAgGCCcagcuccgGGAAGAaCGGGCa -3'
miRNA:   3'- gCG-CGGCa-UUaUGGa-------UCUUCU-GCCCG- -5'
24758 5' -52.2 NC_005264.1 + 160100 0.98 0.038009
Target:  5'- aCGCGCCGUuaaACCUAGAAGACGGGCc -3'
miRNA:   3'- -GCGCGGCAuuaUGGAUCUUCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 159404 0.72 0.850215
Target:  5'- gGCGgCGg---ACCccugAGAAGugGGGCg -3'
miRNA:   3'- gCGCgGCauuaUGGa---UCUUCugCCCG- -5'
24758 5' -52.2 NC_005264.1 + 157371 0.71 0.880598
Target:  5'- --gGCCGUGAUG-CUGGgcGGCGGGg -3'
miRNA:   3'- gcgCGGCAUUAUgGAUCuuCUGCCCg -5'
24758 5' -52.2 NC_005264.1 + 157205 0.68 0.961005
Target:  5'- cCGCGCUGUGGggacACCUAGcgucGCGcGGCc -3'
miRNA:   3'- -GCGCGGCAUUa---UGGAUCuuc-UGC-CCG- -5'
24758 5' -52.2 NC_005264.1 + 156677 0.68 0.970717
Target:  5'- aCGCGUCGcuuuGUACagcccgcgcgAGAcccaGGACGGGCg -3'
miRNA:   3'- -GCGCGGCau--UAUGga--------UCU----UCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 154815 0.72 0.842095
Target:  5'- gGCGCgGUGGcGCCgucguGGCGGGCg -3'
miRNA:   3'- gCGCGgCAUUaUGGaucuuCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 154755 0.79 0.497362
Target:  5'- uCGCGUCGcGAUGCCaGGAGGA-GGGCa -3'
miRNA:   3'- -GCGCGGCaUUAUGGaUCUUCUgCCCG- -5'
24758 5' -52.2 NC_005264.1 + 150600 0.66 0.989306
Target:  5'- gGC-CCGUAAUcacaagaccGCUUGGGAGAUcguaccgGGGCu -3'
miRNA:   3'- gCGcGGCAUUA---------UGGAUCUUCUG-------CCCG- -5'
24758 5' -52.2 NC_005264.1 + 150129 0.66 0.989442
Target:  5'- cCGgGCCGcGGU-CCUAGGauccGGuccCGGGCg -3'
miRNA:   3'- -GCgCGGCaUUAuGGAUCU----UCu--GCCCG- -5'
24758 5' -52.2 NC_005264.1 + 149926 0.7 0.907361
Target:  5'- aCGCGUCGgggGAggACUgcGAGGcCGGGCg -3'
miRNA:   3'- -GCGCGGCa--UUa-UGGauCUUCuGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 148392 0.67 0.982844
Target:  5'- gGCuuGCCGccAUGCCUAuuGggGA-GGGCa -3'
miRNA:   3'- gCG--CGGCauUAUGGAU--CuuCUgCCCG- -5'
24758 5' -52.2 NC_005264.1 + 146344 0.67 0.973529
Target:  5'- uGCGCCGgcGUGCCUcGAccccGCaGGCc -3'
miRNA:   3'- gCGCGGCauUAUGGAuCUuc--UGcCCG- -5'
24758 5' -52.2 NC_005264.1 + 144516 0.69 0.93027
Target:  5'- gGCGUCGUGGgcagagGCaaCUGGcAGGGCGGGUc -3'
miRNA:   3'- gCGCGGCAUUa-----UG--GAUC-UUCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 144300 0.67 0.973529
Target:  5'- uGaCGCCGgcGcGCCcucaggGGGAGACGGcGCc -3'
miRNA:   3'- gC-GCGGCauUaUGGa-----UCUUCUGCC-CG- -5'
24758 5' -52.2 NC_005264.1 + 142827 0.77 0.55723
Target:  5'- gCGCGCCGUGGUAgacccUCUAGGAGAUauGaGGCa -3'
miRNA:   3'- -GCGCGGCAUUAU-----GGAUCUUCUG--C-CCG- -5'
24758 5' -52.2 NC_005264.1 + 139716 0.69 0.94488
Target:  5'- aCGCGaCGUc-UAUCUcucgcucguuGGGAGGCGGGCg -3'
miRNA:   3'- -GCGCgGCAuuAUGGA----------UCUUCUGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.