Results 1 - 20 of 140 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24758 | 5' | -52.2 | NC_005264.1 | + | 162151 | 0.7 | 0.907361 |
Target: 5'- aCGCGCgGU---GCCUGGAcaccuaAGcACGGGUg -3' miRNA: 3'- -GCGCGgCAuuaUGGAUCU------UC-UGCCCG- -5' |
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24758 | 5' | -52.2 | NC_005264.1 | + | 100202 | 0.72 | 0.850215 |
Target: 5'- gCGUGCUGc---GCUUGGAcGGCGGGCg -3' miRNA: 3'- -GCGCGGCauuaUGGAUCUuCUGCCCG- -5' |
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24758 | 5' | -52.2 | NC_005264.1 | + | 13889 | 0.71 | 0.873329 |
Target: 5'- aCGCGUCGUc--GCCUgcAGgcGACGGGg -3' miRNA: 3'- -GCGCGGCAuuaUGGA--UCuuCUGCCCg -5' |
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24758 | 5' | -52.2 | NC_005264.1 | + | 16028 | 0.71 | 0.873329 |
Target: 5'- cCGCGCCuccGUGCagucgagGGAAGACGGGa -3' miRNA: 3'- -GCGCGGcauUAUGga-----UCUUCUGCCCg -5' |
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24758 | 5' | -52.2 | NC_005264.1 | + | 69717 | 0.71 | 0.880598 |
Target: 5'- gGCGCCaucGUGA-ACCgcgGGAGcGCGGGCa -3' miRNA: 3'- gCGCGG---CAUUaUGGa--UCUUcUGCCCG- -5' |
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24758 | 5' | -52.2 | NC_005264.1 | + | 157371 | 0.71 | 0.880598 |
Target: 5'- --gGCCGUGAUG-CUGGgcGGCGGGg -3' miRNA: 3'- gcgCGGCAUUAUgGAUCuuCUGCCCg -5' |
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24758 | 5' | -52.2 | NC_005264.1 | + | 35957 | 0.71 | 0.88764 |
Target: 5'- uCGCGCCGacGAUggcgauucGCCUGGAGG--GGGCg -3' miRNA: 3'- -GCGCGGCa-UUA--------UGGAUCUUCugCCCG- -5' |
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24758 | 5' | -52.2 | NC_005264.1 | + | 122306 | 0.7 | 0.901025 |
Target: 5'- aGCGCCac-GUcCCUGGgcGACGGGg -3' miRNA: 3'- gCGCGGcauUAuGGAUCuuCUGCCCg -5' |
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24758 | 5' | -52.2 | NC_005264.1 | + | 149926 | 0.7 | 0.907361 |
Target: 5'- aCGCGUCGgggGAggACUgcGAGGcCGGGCg -3' miRNA: 3'- -GCGCGGCa--UUa-UGGauCUUCuGCCCG- -5' |
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24758 | 5' | -52.2 | NC_005264.1 | + | 93231 | 0.72 | 0.842095 |
Target: 5'- uCGCGCCacgaucguGUAAUACC-AGcAAG-CGGGCu -3' miRNA: 3'- -GCGCGG--------CAUUAUGGaUC-UUCuGCCCG- -5' |
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24758 | 5' | -52.2 | NC_005264.1 | + | 74133 | 0.72 | 0.842095 |
Target: 5'- cCGCGaCCGUuAUGuCCUAGAagcagugaaGGACGGuGCc -3' miRNA: 3'- -GCGC-GGCAuUAU-GGAUCU---------UCUGCC-CG- -5' |
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24758 | 5' | -52.2 | NC_005264.1 | + | 154815 | 0.72 | 0.842095 |
Target: 5'- gGCGCgGUGGcGCCgucguGGCGGGCg -3' miRNA: 3'- gCGCGgCAUUaUGGaucuuCUGCCCG- -5' |
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24758 | 5' | -52.2 | NC_005264.1 | + | 142827 | 0.77 | 0.55723 |
Target: 5'- gCGCGCCGUGGUAgacccUCUAGGAGAUauGaGGCa -3' miRNA: 3'- -GCGCGGCAUUAU-----GGAUCUUCUG--C-CCG- -5' |
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24758 | 5' | -52.2 | NC_005264.1 | + | 95183 | 0.75 | 0.670777 |
Target: 5'- gGUGCCGU---GCCauaacGAAGACGGGCc -3' miRNA: 3'- gCGCGGCAuuaUGGau---CUUCUGCCCG- -5' |
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24758 | 5' | -52.2 | NC_005264.1 | + | 122637 | 0.75 | 0.711681 |
Target: 5'- -cCGCCGcGGgggGCCgcGAGGGCGGGCg -3' miRNA: 3'- gcGCGGCaUUa--UGGauCUUCUGCCCG- -5' |
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24758 | 5' | -52.2 | NC_005264.1 | + | 93184 | 0.75 | 0.71572 |
Target: 5'- aGCGCCGcgugcccgACCUAGAAagcgucgucauggacGAUGGGCa -3' miRNA: 3'- gCGCGGCauua----UGGAUCUU---------------CUGCCCG- -5' |
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24758 | 5' | -52.2 | NC_005264.1 | + | 19921 | 0.73 | 0.770758 |
Target: 5'- gGCGCCGUGccaGUACCUcGAGGACGc-- -3' miRNA: 3'- gCGCGGCAU---UAUGGAuCUUCUGCccg -5' |
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24758 | 5' | -52.2 | NC_005264.1 | + | 73325 | 0.72 | 0.816589 |
Target: 5'- aGCGCCGUGAUAUaCUGGA--GCGGcuGCa -3' miRNA: 3'- gCGCGGCAUUAUG-GAUCUucUGCC--CG- -5' |
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24758 | 5' | -52.2 | NC_005264.1 | + | 77976 | 0.72 | 0.833779 |
Target: 5'- gGCGCCGcgcGUACC-GGA--GCGGGCg -3' miRNA: 3'- gCGCGGCau-UAUGGaUCUucUGCCCG- -5' |
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24758 | 5' | -52.2 | NC_005264.1 | + | 19426 | 0.72 | 0.842095 |
Target: 5'- gGCGCCGggugugGCCgcGggGcGCGGGUg -3' miRNA: 3'- gCGCGGCauua--UGGauCuuC-UGCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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