miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24758 5' -52.2 NC_005264.1 + 26406 0.66 0.990852
Target:  5'- aGCGCCcaugcucuuccGCCUcAGAcuacgagaccgcGGACGGGCg -3'
miRNA:   3'- gCGCGGcauua------UGGA-UCU------------UCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 111072 0.67 0.98079
Target:  5'- uCGCGCCGggcGAUugcaucucGCuCUcaGAGAUGGGCu -3'
miRNA:   3'- -GCGCGGCa--UUA--------UG-GAucUUCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 229 0.67 0.98079
Target:  5'- uCGCuuuCCGU---GCCUGGcgccacagcGAGGCGGGCc -3'
miRNA:   3'- -GCGc--GGCAuuaUGGAUC---------UUCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 41073 0.98 0.038009
Target:  5'- aCGCGCCGUuaaACCUAGAAGACGGGCc -3'
miRNA:   3'- -GCGCGGCAuuaUGGAUCUUCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 119412 0.66 0.989442
Target:  5'- gGUGCUGUAcuUGCaCUcgcGGcuGGCGGGCg -3'
miRNA:   3'- gCGCGGCAUu-AUG-GA---UCuuCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 52531 0.66 0.989306
Target:  5'- uGCGCCGcguggcagAGUACUgcaucgaUGGAauGGGCGGuGCg -3'
miRNA:   3'- gCGCGGCa-------UUAUGG-------AUCU--UCUGCC-CG- -5'
24758 5' -52.2 NC_005264.1 + 25604 0.66 0.988017
Target:  5'- aGCGCCGg---GCCggcguugcGGAacacggcggcGGugGGGCc -3'
miRNA:   3'- gCGCGGCauuaUGGa-------UCU----------UCugCCCG- -5'
24758 5' -52.2 NC_005264.1 + 91415 0.66 0.987562
Target:  5'- aGCGCCGggGcACCggcGGAGucugugucauagccACGGGCc -3'
miRNA:   3'- gCGCGGCauUaUGGau-CUUC--------------UGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 125715 0.66 0.986449
Target:  5'- gGCGCC-UGGUGCCccugUGGAAcGAguaguUGGGCg -3'
miRNA:   3'- gCGCGGcAUUAUGG----AUCUU-CU-----GCCCG- -5'
24758 5' -52.2 NC_005264.1 + 123225 0.67 0.98079
Target:  5'- aGCGCCGUG---UCUAGGAGcaaGCGcGCa -3'
miRNA:   3'- gCGCGGCAUuauGGAUCUUC---UGCcCG- -5'
24758 5' -52.2 NC_005264.1 + 162237 0.66 0.984727
Target:  5'- aCGCcaCCGUAGUcGCCUcgcugccGGAGuCGGGCg -3'
miRNA:   3'- -GCGc-GGCAUUA-UGGAu------CUUCuGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 45743 0.66 0.987408
Target:  5'- gCGCGCgGUcGUGCCguaucuagcacacAGAcagcGAUGGGCg -3'
miRNA:   3'- -GCGCGgCAuUAUGGa------------UCUu---CUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 1539 0.66 0.99073
Target:  5'- cCGCGgCGUug-ACCgcgccGGcaauAGGCGGGCc -3'
miRNA:   3'- -GCGCgGCAuuaUGGa----UCu---UCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 41349 0.66 0.984727
Target:  5'- aGCaGCCGcgAAgGCCcagcuccgGGAAGAaCGGGCa -3'
miRNA:   3'- gCG-CGGCa-UUaUGGa-------UCUUCU-GCCCG- -5'
24758 5' -52.2 NC_005264.1 + 104481 0.66 0.989442
Target:  5'- uCGCGCCGgccccGCC-AGAGuacGACagGGGCg -3'
miRNA:   3'- -GCGCGGCauua-UGGaUCUU---CUG--CCCG- -5'
24758 5' -52.2 NC_005264.1 + 47776 0.66 0.987562
Target:  5'- gGUGCCGaug-GCCUGcacGAAGACcucggcuuucgccgGGGCg -3'
miRNA:   3'- gCGCGGCauuaUGGAU---CUUCUG--------------CCCG- -5'
24758 5' -52.2 NC_005264.1 + 124735 0.67 0.981004
Target:  5'- uCGCGCUGUAAaauuuuucccgggggGCCaAGGAagcacGGCGGGUa -3'
miRNA:   3'- -GCGCGGCAUUa--------------UGGaUCUU-----CUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 9657 0.67 0.98079
Target:  5'- aGUGCagauCGUcuagcgagGCCUuggGGGAGGCGGGCu -3'
miRNA:   3'- gCGCG----GCAuua-----UGGA---UCUUCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 31102 0.66 0.989442
Target:  5'- cCGgGCCGcGGU-CCUAGGauccGGuccCGGGCg -3'
miRNA:   3'- -GCgCGGCaUUAuGGAUCU----UCu--GCCCG- -5'
24758 5' -52.2 NC_005264.1 + 150600 0.66 0.989306
Target:  5'- gGC-CCGUAAUcacaagaccGCUUGGGAGAUcguaccgGGGCu -3'
miRNA:   3'- gCGcGGCAUUA---------UGGAUCUUCUG-------CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.