miRNA display CGI


Results 1 - 20 of 140 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24758 5' -52.2 NC_005264.1 + 12277 0.66 0.99073
Target:  5'- aCGaUGCCGUAc--CCUGGcggcAGGGCGGuGCg -3'
miRNA:   3'- -GC-GCGGCAUuauGGAUC----UUCUGCC-CG- -5'
24758 5' -52.2 NC_005264.1 + 3623 0.66 0.988166
Target:  5'- gGCGCUGUGGgcgggguggggguuUCUGGGAGGCgguuugagcuggGGGCg -3'
miRNA:   3'- gCGCGGCAUUau------------GGAUCUUCUG------------CCCG- -5'
24758 5' -52.2 NC_005264.1 + 54424 0.66 0.986449
Target:  5'- gCGCGCCGa-----CUAGGGcGugGGGUu -3'
miRNA:   3'- -GCGCGGCauuaugGAUCUU-CugCCCG- -5'
24758 5' -52.2 NC_005264.1 + 46734 0.66 0.984727
Target:  5'- aGCGCUaugucuggcauGUAcaucuGUACCgGGuAGAUGGGCa -3'
miRNA:   3'- gCGCGG-----------CAU-----UAUGGaUCuUCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 150129 0.66 0.989442
Target:  5'- cCGgGCCGcGGU-CCUAGGauccGGuccCGGGCg -3'
miRNA:   3'- -GCgCGGCaUUAuGGAUCU----UCu--GCCCG- -5'
24758 5' -52.2 NC_005264.1 + 160376 0.66 0.984727
Target:  5'- aGCaGCCGcgAAgGCCcagcuccgGGAAGAaCGGGCa -3'
miRNA:   3'- gCG-CGGCa-UUaUGGa-------UCUUCU-GCCCG- -5'
24758 5' -52.2 NC_005264.1 + 36152 0.66 0.988017
Target:  5'- aGCGCUGUGcgAgCUcgGGAAgcgcGACGGGa -3'
miRNA:   3'- gCGCGGCAUuaUgGA--UCUU----CUGCCCg -5'
24758 5' -52.2 NC_005264.1 + 31173 0.66 0.99073
Target:  5'- aCGUGCCGccaacgGUCUGGc-GGCGGGCa -3'
miRNA:   3'- -GCGCGGCauua--UGGAUCuuCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 26406 0.66 0.990852
Target:  5'- aGCGCCcaugcucuuccGCCUcAGAcuacgagaccgcGGACGGGCg -3'
miRNA:   3'- gCGCGGcauua------UGGA-UCU------------UCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 33891 0.66 0.988017
Target:  5'- gGCGgCGgugGAacuCCUAGAAGACauGGCg -3'
miRNA:   3'- gCGCgGCa--UUau-GGAUCUUCUGc-CCG- -5'
24758 5' -52.2 NC_005264.1 + 85451 0.66 0.986449
Target:  5'- gCGgGCCGgc---CCUGGAAcuccuuACGGGCg -3'
miRNA:   3'- -GCgCGGCauuauGGAUCUUc-----UGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 58774 0.66 0.989442
Target:  5'- aCGCGCgGUGGUcgGCgcAGAGGAUGucGGCa -3'
miRNA:   3'- -GCGCGgCAUUA--UGgaUCUUCUGC--CCG- -5'
24758 5' -52.2 NC_005264.1 + 64515 0.66 0.989306
Target:  5'- cCGCGCUGUucuGUccgcgccGCCgcGGAGGgGGGUu -3'
miRNA:   3'- -GCGCGGCAu--UA-------UGGauCUUCUgCCCG- -5'
24758 5' -52.2 NC_005264.1 + 35531 0.66 0.989442
Target:  5'- gGCGCgGcGAaACCUauaGGGcguAGugGGGCa -3'
miRNA:   3'- gCGCGgCaUUaUGGA---UCU---UCugCCCG- -5'
24758 5' -52.2 NC_005264.1 + 120566 0.66 0.99073
Target:  5'- cCGCGgCGUug-ACCgcgccGGcaauAGGCGGGCc -3'
miRNA:   3'- -GCGCgGCAuuaUGGa----UCu---UCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 100401 0.66 0.99073
Target:  5'- uGCGCCccGUAuuggucgugguuGUGCUgcgaAGAAGcCGGGCc -3'
miRNA:   3'- gCGCGG--CAU------------UAUGGa---UCUUCuGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 134744 0.66 0.989442
Target:  5'- gGCGCCGgugcgcaaUAAcGCCUGacuuugacGAAGACGGucGCa -3'
miRNA:   3'- gCGCGGC--------AUUaUGGAU--------CUUCUGCC--CG- -5'
24758 5' -52.2 NC_005264.1 + 117931 0.66 0.989442
Target:  5'- uGCGCCGgaucucuCCUcccgcccccAGAcgacGACGGGCc -3'
miRNA:   3'- gCGCGGCauuau--GGA---------UCUu---CUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 1539 0.66 0.99073
Target:  5'- cCGCGgCGUug-ACCgcgccGGcaauAGGCGGGCc -3'
miRNA:   3'- -GCGCgGCAuuaUGGa----UCu---UCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 22819 0.66 0.984727
Target:  5'- -cCGuuGUGGUacaGCCUcAGcGAGACGGGUa -3'
miRNA:   3'- gcGCggCAUUA---UGGA-UC-UUCUGCCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.