miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24758 5' -52.2 NC_005264.1 + 160100 0.98 0.038009
Target:  5'- aCGCGCCGUuaaACCUAGAAGACGGGCc -3'
miRNA:   3'- -GCGCGGCAuuaUGGAUCUUCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 41073 0.98 0.038009
Target:  5'- aCGCGCCGUuaaACCUAGAAGACGGGCc -3'
miRNA:   3'- -GCGCGGCAuuaUGGAUCUUCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 154755 0.79 0.497362
Target:  5'- uCGCGUCGcGAUGCCaGGAGGA-GGGCa -3'
miRNA:   3'- -GCGCGGCaUUAUGGaUCUUCUgCCCG- -5'
24758 5' -52.2 NC_005264.1 + 120097 0.78 0.536999
Target:  5'- uCGUGCCcaccgGGUGCCgcgcAGAAGugGGGCg -3'
miRNA:   3'- -GCGCGGca---UUAUGGa---UCUUCugCCCG- -5'
24758 5' -52.2 NC_005264.1 + 142827 0.77 0.55723
Target:  5'- gCGCGCCGUGGUAgacccUCUAGGAGAUauGaGGCa -3'
miRNA:   3'- -GCGCGGCAUUAU-----GGAUCUUCUG--C-CCG- -5'
24758 5' -52.2 NC_005264.1 + 44859 0.77 0.567428
Target:  5'- gGUGCCGUcgagaGAUcugcaGCCUgGGGAGGCGGGCc -3'
miRNA:   3'- gCGCGGCA-----UUA-----UGGA-UCUUCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 135674 0.76 0.629352
Target:  5'- gCGcCGCCGUGAagacgGCCUGcacGGACGGGCc -3'
miRNA:   3'- -GC-GCGGCAUUa----UGGAUcu-UCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 95183 0.75 0.670777
Target:  5'- gGUGCCGU---GCCauaacGAAGACGGGCc -3'
miRNA:   3'- gCGCGGCAuuaUGGau---CUUCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 3610 0.75 0.711681
Target:  5'- -cCGCCGcGGgggGCCgcGAGGGCGGGCg -3'
miRNA:   3'- gcGCGGCaUUa--UGGauCUUCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 122637 0.75 0.711681
Target:  5'- -cCGCCGcGGgggGCCgcGAGGGCGGGCg -3'
miRNA:   3'- gcGCGGCaUUa--UGGauCUUCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 93184 0.75 0.71572
Target:  5'- aGCGCCGcgugcccgACCUAGAAagcgucgucauggacGAUGGGCa -3'
miRNA:   3'- gCGCGGCauua----UGGAUCUU---------------CUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 103742 0.73 0.770758
Target:  5'- gGCgGCCGccAUGCUUAGGuucaugcugAGGCGGGCg -3'
miRNA:   3'- gCG-CGGCauUAUGGAUCU---------UCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 19921 0.73 0.770758
Target:  5'- gGCGCCGUGccaGUACCUcGAGGACGc-- -3'
miRNA:   3'- gCGCGGCAU---UAUGGAuCUUCUGCccg -5'
24758 5' -52.2 NC_005264.1 + 57369 0.73 0.770758
Target:  5'- gGUGCCGUGuuaACCUuc-GGugGGGCg -3'
miRNA:   3'- gCGCGGCAUua-UGGAucuUCugCCCG- -5'
24758 5' -52.2 NC_005264.1 + 67267 0.73 0.807732
Target:  5'- gCGCGCUGUGGUAU--AGAcgacgcgaauGGGCGGGUa -3'
miRNA:   3'- -GCGCGGCAUUAUGgaUCU----------UCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 73325 0.72 0.816589
Target:  5'- aGCGCCGUGAUAUaCUGGA--GCGGcuGCa -3'
miRNA:   3'- gCGCGGCAUUAUG-GAUCUucUGCC--CG- -5'
24758 5' -52.2 NC_005264.1 + 77976 0.72 0.833779
Target:  5'- gGCGCCGcgcGUACC-GGA--GCGGGCg -3'
miRNA:   3'- gCGCGGCau-UAUGGaUCUucUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 93231 0.72 0.842095
Target:  5'- uCGCGCCacgaucguGUAAUACC-AGcAAG-CGGGCu -3'
miRNA:   3'- -GCGCGG--------CAUUAUGGaUC-UUCuGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 19426 0.72 0.842095
Target:  5'- gGCGCCGggugugGCCgcGggGcGCGGGUg -3'
miRNA:   3'- gCGCGGCauua--UGGauCuuC-UGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 35789 0.72 0.842095
Target:  5'- gGCGCgGUGGcGCCgucguGGCGGGCg -3'
miRNA:   3'- gCGCGgCAUUaUGGaucuuCUGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.