miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24759 5' -59.4 NC_005264.1 + 160213 1.07 0.001968
Target:  5'- gAGACAGAAGACUCCGCCCCGCCUGCUc -3'
miRNA:   3'- -UCUGUCUUCUGAGGCGGGGCGGACGA- -5'
24759 5' -59.4 NC_005264.1 + 41186 1.07 0.001968
Target:  5'- gAGACAGAAGACUCCGCCCCGCCUGCUc -3'
miRNA:   3'- -UCUGUCUUCUGAGGCGGGGCGGACGA- -5'
24759 5' -59.4 NC_005264.1 + 152767 0.8 0.129613
Target:  5'- cGGCGGGAGAUUCCGCCgCGgCUGCa -3'
miRNA:   3'- uCUGUCUUCUGAGGCGGgGCgGACGa -5'
24759 5' -59.4 NC_005264.1 + 109841 0.73 0.393615
Target:  5'- gAGGCAGAGGAUUuuGCCCgcgagCGCgaGCUa -3'
miRNA:   3'- -UCUGUCUUCUGAggCGGG-----GCGgaCGA- -5'
24759 5' -59.4 NC_005264.1 + 15862 0.72 0.436355
Target:  5'- aAGAUucucgAGGAGGCUCCGCa--GCCUGCg -3'
miRNA:   3'- -UCUG-----UCUUCUGAGGCGgggCGGACGa -5'
24759 5' -59.4 NC_005264.1 + 38596 0.71 0.463247
Target:  5'- -cGCGGAAGaagaGCUUCGCCUCGCCgcgGCg -3'
miRNA:   3'- ucUGUCUUC----UGAGGCGGGGCGGa--CGa -5'
24759 5' -59.4 NC_005264.1 + 157623 0.71 0.463247
Target:  5'- -cGCGGAAGaagaGCUUCGCCUCGCCgcgGCg -3'
miRNA:   3'- ucUGUCUUC----UGAGGCGGGGCGGa--CGa -5'
24759 5' -59.4 NC_005264.1 + 39818 0.71 0.481649
Target:  5'- uGGGCgAGGAGGCaugugCCGCCCUGCUUgGCg -3'
miRNA:   3'- -UCUG-UCUUCUGa----GGCGGGGCGGA-CGa -5'
24759 5' -59.4 NC_005264.1 + 158844 0.71 0.481649
Target:  5'- uGGGCgAGGAGGCaugugCCGCCCUGCUUgGCg -3'
miRNA:   3'- -UCUG-UCUUCUGa----GGCGGGGCGGA-CGa -5'
24759 5' -59.4 NC_005264.1 + 3505 0.71 0.490982
Target:  5'- gGGGCAGggGAUccucgccgUCCGCCUCGUCgaaccGCg -3'
miRNA:   3'- -UCUGUCuuCUG--------AGGCGGGGCGGa----CGa -5'
24759 5' -59.4 NC_005264.1 + 158727 0.71 0.490982
Target:  5'- uGGCAGAGGGgacaccCUCgGCCCCGUCgUGCc -3'
miRNA:   3'- uCUGUCUUCU------GAGgCGGGGCGG-ACGa -5'
24759 5' -59.4 NC_005264.1 + 122532 0.71 0.490982
Target:  5'- gGGGCAGggGAUccucgccgUCCGCCUCGUCgaaccGCg -3'
miRNA:   3'- -UCUGUCuuCUG--------AGGCGGGGCGGa----CGa -5'
24759 5' -59.4 NC_005264.1 + 39701 0.71 0.490982
Target:  5'- uGGCAGAGGGgacaccCUCgGCCCCGUCgUGCc -3'
miRNA:   3'- uCUGUCUUCU------GAGgCGGGGCGG-ACGa -5'
24759 5' -59.4 NC_005264.1 + 101934 0.7 0.509893
Target:  5'- aGGACauaaAGAAGAUcuuuacgCCGUCCCGCCUGg- -3'
miRNA:   3'- -UCUG----UCUUCUGa------GGCGGGGCGGACga -5'
24759 5' -59.4 NC_005264.1 + 158846 0.7 0.529102
Target:  5'- cGACAGAGaAC-CCGCCgCCGCCgaaugcgGCUa -3'
miRNA:   3'- uCUGUCUUcUGaGGCGG-GGCGGa------CGA- -5'
24759 5' -59.4 NC_005264.1 + 95002 0.7 0.529102
Target:  5'- aGGACAuaauGAAGAgcaUCUGCCCCGCggGCUg -3'
miRNA:   3'- -UCUGU----CUUCUg--AGGCGGGGCGgaCGA- -5'
24759 5' -59.4 NC_005264.1 + 34234 0.7 0.548571
Target:  5'- aAGACGGAcGGGUUUCGUCCCGCCucgUGCg -3'
miRNA:   3'- -UCUGUCU-UCUGAGGCGGGGCGG---ACGa -5'
24759 5' -59.4 NC_005264.1 + 77345 0.7 0.548571
Target:  5'- -cGCGGGAGAaguuggcgauCUCCGUCCCGUCUaGCg -3'
miRNA:   3'- ucUGUCUUCU----------GAGGCGGGGCGGA-CGa -5'
24759 5' -59.4 NC_005264.1 + 76677 0.7 0.55839
Target:  5'- cGGCAGAAGAuacCUCUGCCCaGCUUgGCg -3'
miRNA:   3'- uCUGUCUUCU---GAGGCGGGgCGGA-CGa -5'
24759 5' -59.4 NC_005264.1 + 78023 0.69 0.578169
Target:  5'- uGACGGcGAGGCUUCGCUCCGugcgccaugcCCUGCc -3'
miRNA:   3'- uCUGUC-UUCUGAGGCGGGGC----------GGACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.