Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24759 | 5' | -59.4 | NC_005264.1 | + | 20 | 0.69 | 0.6081 |
Target: 5'- cGACAGAA-ACUgCGCCCCGCacccacgGCg -3' miRNA: 3'- uCUGUCUUcUGAgGCGGGGCGga-----CGa -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 1889 | 0.66 | 0.782674 |
Target: 5'- uGGCAGAaagcuacAGACcCCGCCgCGaCUGCg -3' miRNA: 3'- uCUGUCU-------UCUGaGGCGGgGCgGACGa -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 2834 | 0.66 | 0.77448 |
Target: 5'- uGGCGGAGGgccggucgcGCUCgCGCCgUCGCCcGCUg -3' miRNA: 3'- uCUGUCUUC---------UGAG-GCGG-GGCGGaCGA- -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 3348 | 0.66 | 0.773563 |
Target: 5'- uGGC-GAGGgucuuucGCUCCGCUCCGUCUGg- -3' miRNA: 3'- uCUGuCUUC-------UGAGGCGGGGCGGACga -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 3417 | 0.67 | 0.698016 |
Target: 5'- cGGgGGAgGGACguagggCCGCgCCCGCgCUGCUc -3' miRNA: 3'- uCUgUCU-UCUGa-----GGCG-GGGCG-GACGA- -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 3505 | 0.71 | 0.490982 |
Target: 5'- gGGGCAGggGAUccucgccgUCCGCCUCGUCgaaccGCg -3' miRNA: 3'- -UCUGUCuuCUG--------AGGCGGGGCGGa----CGa -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 5450 | 0.66 | 0.765259 |
Target: 5'- cGcCGGAGGAggucCUaaCCGCCCCGCCgcccaGCa -3' miRNA: 3'- uCuGUCUUCU----GA--GGCGGGGCGGa----CGa -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 5855 | 0.69 | 0.598097 |
Target: 5'- cGGACcuuuaGGAAGAC-CCGCgCCGCgaGCg -3' miRNA: 3'- -UCUG-----UCUUCUGaGGCGgGGCGgaCGa -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 7145 | 0.68 | 0.638185 |
Target: 5'- aGGGCAGccuGAGGCUaCGCCCUGCCgaGUa -3' miRNA: 3'- -UCUGUC---UUCUGAgGCGGGGCGGa-CGa -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 12891 | 0.67 | 0.70785 |
Target: 5'- cGGACGGAccguCgagCCGCCCgGCCUcGCa -3' miRNA: 3'- -UCUGUCUucu-Ga--GGCGGGgCGGA-CGa -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 15862 | 0.72 | 0.436355 |
Target: 5'- aAGAUucucgAGGAGGCUCCGCa--GCCUGCg -3' miRNA: 3'- -UCUG-----UCUUCUGAGGCGgggCGGACGa -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 16012 | 0.68 | 0.658231 |
Target: 5'- uGGCAGgcGACgaCCGCCgCGCCuccgUGCa -3' miRNA: 3'- uCUGUCuuCUGa-GGCGGgGCGG----ACGa -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 16833 | 0.66 | 0.783578 |
Target: 5'- uGGuCAGAGGAUacuauacuUCCGCCagCCGCC-GCg -3' miRNA: 3'- -UCuGUCUUCUG--------AGGCGG--GGCGGaCGa -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 18298 | 0.66 | 0.745536 |
Target: 5'- cAGGgGGAaugccuaGGAC-CCGCCCUGCCaGUUg -3' miRNA: 3'- -UCUgUCU-------UCUGaGGCGGGGCGGaCGA- -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 20139 | 0.68 | 0.668228 |
Target: 5'- cGGGCAGgcGAUggCGCgCCGCCgGCg -3' miRNA: 3'- -UCUGUCuuCUGagGCGgGGCGGaCGa -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 25689 | 0.66 | 0.783578 |
Target: 5'- gGGACGGGAcGCgcaUGCCCCGCCa--- -3' miRNA: 3'- -UCUGUCUUcUGag-GCGGGGCGGacga -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 27831 | 0.69 | 0.6081 |
Target: 5'- cGACGGAggggcAGACUCCGUCUCcagcgucgaaGCUUGCg -3' miRNA: 3'- uCUGUCU-----UCUGAGGCGGGG----------CGGACGa -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 29562 | 0.67 | 0.698016 |
Target: 5'- gAGGCAGAGaucACguugCCGCUCgGCCUGUUu -3' miRNA: 3'- -UCUGUCUUc--UGa---GGCGGGgCGGACGA- -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 34234 | 0.7 | 0.548571 |
Target: 5'- aAGACGGAcGGGUUUCGUCCCGCCucgUGCg -3' miRNA: 3'- -UCUGUCU-UCUGAGGCGGGGCGG---ACGa -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 38596 | 0.71 | 0.463247 |
Target: 5'- -cGCGGAAGaagaGCUUCGCCUCGCCgcgGCg -3' miRNA: 3'- ucUGUCUUC----UGAGGCGGGGCGGa--CGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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