Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24759 | 5' | -59.4 | NC_005264.1 | + | 160213 | 1.07 | 0.001968 |
Target: 5'- gAGACAGAAGACUCCGCCCCGCCUGCUc -3' miRNA: 3'- -UCUGUCUUCUGAGGCGGGGCGGACGA- -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 159511 | 0.68 | 0.648214 |
Target: 5'- uGGCGcGAcuACUCuCGCUCCGCUUGCa -3' miRNA: 3'- uCUGU-CUucUGAG-GCGGGGCGGACGa -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 158846 | 0.7 | 0.529102 |
Target: 5'- cGACAGAGaAC-CCGCCgCCGCCgaaugcgGCUa -3' miRNA: 3'- uCUGUCUUcUGaGGCGG-GGCGGa------CGA- -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 158844 | 0.71 | 0.481649 |
Target: 5'- uGGGCgAGGAGGCaugugCCGCCCUGCUUgGCg -3' miRNA: 3'- -UCUG-UCUUCUGa----GGCGGGGCGGA-CGa -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 158727 | 0.71 | 0.490982 |
Target: 5'- uGGCAGAGGGgacaccCUCgGCCCCGUCgUGCc -3' miRNA: 3'- uCUGUCUUCU------GAGgCGGGGCGG-ACGa -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 157623 | 0.71 | 0.463247 |
Target: 5'- -cGCGGAAGaagaGCUUCGCCUCGCCgcgGCg -3' miRNA: 3'- ucUGUCUUC----UGAGGCGGGGCGGa--CGa -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 152767 | 0.8 | 0.129613 |
Target: 5'- cGGCGGGAGAUUCCGCCgCGgCUGCa -3' miRNA: 3'- uCUGUCUUCUGAGGCGGgGCgGACGa -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 151836 | 0.66 | 0.773563 |
Target: 5'- -aGCGGAAGACUggggccgCCGCUCCGgCgGCg -3' miRNA: 3'- ucUGUCUUCUGA-------GGCGGGGCgGaCGa -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 145559 | 0.68 | 0.638185 |
Target: 5'- uGGGCAGcc--CUCCGCCCCGUC-GCc -3' miRNA: 3'- -UCUGUCuucuGAGGCGGGGCGGaCGa -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 136942 | 0.66 | 0.755925 |
Target: 5'- cGGACaAGAAGGCgcagCGCCCCacugugcggaGUCUGCa -3' miRNA: 3'- -UCUG-UCUUCUGag--GCGGGG----------CGGACGa -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 131917 | 0.67 | 0.70785 |
Target: 5'- cGGACGGAccguCgagCCGCCCgGCCUcGCa -3' miRNA: 3'- -UCUGUCUucu-Ga--GGCGGGgCGGA-CGa -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 125999 | 0.66 | 0.759672 |
Target: 5'- gGGGCAGAcAGuuGCUgucuacgaucuucgcCgCGCCUCGCCUGCg -3' miRNA: 3'- -UCUGUCU-UC--UGA---------------G-GCGGGGCGGACGa -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 124477 | 0.66 | 0.765259 |
Target: 5'- cGcCGGAGGAggucCUaaCCGCCCCGCCgcccaGCa -3' miRNA: 3'- uCuGUCUUCU----GA--GGCGGGGCGGa----CGa -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 122532 | 0.71 | 0.490982 |
Target: 5'- gGGGCAGggGAUccucgccgUCCGCCUCGUCgaaccGCg -3' miRNA: 3'- -UCUGUCuuCUG--------AGGCGGGGCGGa----CGa -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 122444 | 0.67 | 0.698016 |
Target: 5'- cGGgGGAgGGACguagggCCGCgCCCGCgCUGCUc -3' miRNA: 3'- uCUgUCU-UCUGa-----GGCG-GGGCG-GACGA- -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 122375 | 0.66 | 0.773563 |
Target: 5'- uGGC-GAGGgucuuucGCUCCGCUCCGUCUGg- -3' miRNA: 3'- uCUGuCUUC-------UGAGGCGGGGCGGACga -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 121860 | 0.66 | 0.77448 |
Target: 5'- uGGCGGAGGgccggucgcGCUCgCGCCgUCGCCcGCUg -3' miRNA: 3'- uCUGUCUUC---------UGAG-GCGG-GGCGGaCGA- -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 120915 | 0.66 | 0.782674 |
Target: 5'- uGGCAGAaagcuacAGACcCCGCCgCGaCUGCg -3' miRNA: 3'- uCUGUCU-------UCUGaGGCGGgGCgGACGa -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 119047 | 0.69 | 0.6081 |
Target: 5'- cGACAGAA-ACUgCGCCCCGCacccacgGCg -3' miRNA: 3'- uCUGUCUUcUGAgGCGGGGCGga-----CGa -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 109841 | 0.73 | 0.393615 |
Target: 5'- gAGGCAGAGGAUUuuGCCCgcgagCGCgaGCUa -3' miRNA: 3'- -UCUGUCUUCUGAggCGGG-----GCGgaCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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