Results 21 - 40 of 55 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24759 | 5' | -59.4 | NC_005264.1 | + | 39701 | 0.71 | 0.490982 |
Target: 5'- uGGCAGAGGGgacaccCUCgGCCCCGUCgUGCc -3' miRNA: 3'- uCUGUCUUCU------GAGgCGGGGCGG-ACGa -5' |
|||||||
24759 | 5' | -59.4 | NC_005264.1 | + | 39818 | 0.71 | 0.481649 |
Target: 5'- uGGGCgAGGAGGCaugugCCGCCCUGCUUgGCg -3' miRNA: 3'- -UCUG-UCUUCUGa----GGCGGGGCGGA-CGa -5' |
|||||||
24759 | 5' | -59.4 | NC_005264.1 | + | 41186 | 1.07 | 0.001968 |
Target: 5'- gAGACAGAAGACUCCGCCCCGCCUGCUc -3' miRNA: 3'- -UCUGUCUUCUGAGGCGGGGCGGACGA- -5' |
|||||||
24759 | 5' | -59.4 | NC_005264.1 | + | 60634 | 0.67 | 0.727325 |
Target: 5'- -cGCAGGAGcagcaGCUUgauCCCCGCCUGCUc -3' miRNA: 3'- ucUGUCUUC-----UGAGgc-GGGGCGGACGA- -5' |
|||||||
24759 | 5' | -59.4 | NC_005264.1 | + | 63305 | 0.67 | 0.687137 |
Target: 5'- cGGgGGAugcGGACUCCcgccuaccggucaGCCCCGCCaaGCUg -3' miRNA: 3'- uCUgUCU---UCUGAGG-------------CGGGGCGGa-CGA- -5' |
|||||||
24759 | 5' | -59.4 | NC_005264.1 | + | 63969 | 0.67 | 0.736949 |
Target: 5'- aAGACAGA--ACcCCGCUaCCGCUUGCc -3' miRNA: 3'- -UCUGUCUucUGaGGCGG-GGCGGACGa -5' |
|||||||
24759 | 5' | -59.4 | NC_005264.1 | + | 71935 | 0.66 | 0.77448 |
Target: 5'- cAGGCAGGAGAUcgUGCCCCcaacGCCgguaaUGCUa -3' miRNA: 3'- -UCUGUCUUCUGagGCGGGG----CGG-----ACGA- -5' |
|||||||
24759 | 5' | -59.4 | NC_005264.1 | + | 75707 | 0.68 | 0.648214 |
Target: 5'- cGGCGcGAAGACUggugCGCCCCGCggGCg -3' miRNA: 3'- uCUGU-CUUCUGAg---GCGGGGCGgaCGa -5' |
|||||||
24759 | 5' | -59.4 | NC_005264.1 | + | 75939 | 0.67 | 0.736949 |
Target: 5'- cGGACAGcguGGuCUCUaucgcgGCCgCCGCCUGUg -3' miRNA: 3'- -UCUGUCu--UCuGAGG------CGG-GGCGGACGa -5' |
|||||||
24759 | 5' | -59.4 | NC_005264.1 | + | 76677 | 0.7 | 0.55839 |
Target: 5'- cGGCAGAAGAuacCUCUGCCCaGCUUgGCg -3' miRNA: 3'- uCUGUCUUCU---GAGGCGGGgCGGA-CGa -5' |
|||||||
24759 | 5' | -59.4 | NC_005264.1 | + | 77345 | 0.7 | 0.548571 |
Target: 5'- -cGCGGGAGAaguuggcgauCUCCGUCCCGUCUaGCg -3' miRNA: 3'- ucUGUCUUCU----------GAGGCGGGGCGGA-CGa -5' |
|||||||
24759 | 5' | -59.4 | NC_005264.1 | + | 78023 | 0.69 | 0.578169 |
Target: 5'- uGACGGcGAGGCUUCGCUCCGugcgccaugcCCUGCc -3' miRNA: 3'- uCUGUC-UUCUGAGGCGGGGC----------GGACGa -5' |
|||||||
24759 | 5' | -59.4 | NC_005264.1 | + | 95002 | 0.7 | 0.529102 |
Target: 5'- aGGACAuaauGAAGAgcaUCUGCCCCGCggGCUg -3' miRNA: 3'- -UCUGU----CUUCUg--AGGCGGGGCGgaCGA- -5' |
|||||||
24759 | 5' | -59.4 | NC_005264.1 | + | 101934 | 0.7 | 0.509893 |
Target: 5'- aGGACauaaAGAAGAUcuuuacgCCGUCCCGCCUGg- -3' miRNA: 3'- -UCUG----UCUUCUGa------GGCGGGGCGGACga -5' |
|||||||
24759 | 5' | -59.4 | NC_005264.1 | + | 106671 | 0.66 | 0.755925 |
Target: 5'- cGGCAGAGGaACUCCGCgCgGagUGCg -3' miRNA: 3'- uCUGUCUUC-UGAGGCGgGgCggACGa -5' |
|||||||
24759 | 5' | -59.4 | NC_005264.1 | + | 109841 | 0.73 | 0.393615 |
Target: 5'- gAGGCAGAGGAUUuuGCCCgcgagCGCgaGCUa -3' miRNA: 3'- -UCUGUCUUCUGAggCGGG-----GCGgaCGA- -5' |
|||||||
24759 | 5' | -59.4 | NC_005264.1 | + | 119047 | 0.69 | 0.6081 |
Target: 5'- cGACAGAA-ACUgCGCCCCGCacccacgGCg -3' miRNA: 3'- uCUGUCUUcUGAgGCGGGGCGga-----CGa -5' |
|||||||
24759 | 5' | -59.4 | NC_005264.1 | + | 120915 | 0.66 | 0.782674 |
Target: 5'- uGGCAGAaagcuacAGACcCCGCCgCGaCUGCg -3' miRNA: 3'- uCUGUCU-------UCUGaGGCGGgGCgGACGa -5' |
|||||||
24759 | 5' | -59.4 | NC_005264.1 | + | 121860 | 0.66 | 0.77448 |
Target: 5'- uGGCGGAGGgccggucgcGCUCgCGCCgUCGCCcGCUg -3' miRNA: 3'- uCUGUCUUC---------UGAG-GCGG-GGCGGaCGA- -5' |
|||||||
24759 | 5' | -59.4 | NC_005264.1 | + | 122375 | 0.66 | 0.773563 |
Target: 5'- uGGC-GAGGgucuuucGCUCCGCUCCGUCUGg- -3' miRNA: 3'- uCUGuCUUC-------UGAGGCGGGGCGGACga -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home