Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24759 | 5' | -59.4 | NC_005264.1 | + | 158727 | 0.71 | 0.490982 |
Target: 5'- uGGCAGAGGGgacaccCUCgGCCCCGUCgUGCc -3' miRNA: 3'- uCUGUCUUCU------GAGgCGGGGCGG-ACGa -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 122532 | 0.71 | 0.490982 |
Target: 5'- gGGGCAGggGAUccucgccgUCCGCCUCGUCgaaccGCg -3' miRNA: 3'- -UCUGUCuuCUG--------AGGCGGGGCGGa----CGa -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 101934 | 0.7 | 0.509893 |
Target: 5'- aGGACauaaAGAAGAUcuuuacgCCGUCCCGCCUGg- -3' miRNA: 3'- -UCUG----UCUUCUGa------GGCGGGGCGGACga -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 95002 | 0.7 | 0.529102 |
Target: 5'- aGGACAuaauGAAGAgcaUCUGCCCCGCggGCUg -3' miRNA: 3'- -UCUGU----CUUCUg--AGGCGGGGCGgaCGA- -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 7145 | 0.68 | 0.638185 |
Target: 5'- aGGGCAGccuGAGGCUaCGCCCUGCCgaGUa -3' miRNA: 3'- -UCUGUC---UUCUGAgGCGGGGCGGa-CGa -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 119047 | 0.69 | 0.6081 |
Target: 5'- cGACAGAA-ACUgCGCCCCGCacccacgGCg -3' miRNA: 3'- uCUGUCUUcUGAgGCGGGGCGga-----CGa -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 5855 | 0.69 | 0.598097 |
Target: 5'- cGGACcuuuaGGAAGAC-CCGCgCCGCgaGCg -3' miRNA: 3'- -UCUG-----UCUUCUGaGGCGgGGCGgaCGa -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 78023 | 0.69 | 0.578169 |
Target: 5'- uGACGGcGAGGCUUCGCUCCGugcgccaugcCCUGCc -3' miRNA: 3'- uCUGUC-UUCUGAGGCGGGGC----------GGACGa -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 76677 | 0.7 | 0.55839 |
Target: 5'- cGGCAGAAGAuacCUCUGCCCaGCUUgGCg -3' miRNA: 3'- uCUGUCUUCU---GAGGCGGGgCGGA-CGa -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 34234 | 0.7 | 0.548571 |
Target: 5'- aAGACGGAcGGGUUUCGUCCCGCCucgUGCg -3' miRNA: 3'- -UCUGUCU-UCUGAGGCGGGGCGG---ACGa -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 12891 | 0.67 | 0.70785 |
Target: 5'- cGGACGGAccguCgagCCGCCCgGCCUcGCa -3' miRNA: 3'- -UCUGUCUucu-Ga--GGCGGGgCGGA-CGa -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 75939 | 0.67 | 0.736949 |
Target: 5'- cGGACAGcguGGuCUCUaucgcgGCCgCCGCCUGUg -3' miRNA: 3'- -UCUGUCu--UCuGAGG------CGG-GGCGGACGa -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 63969 | 0.67 | 0.736949 |
Target: 5'- aAGACAGA--ACcCCGCUaCCGCUUGCc -3' miRNA: 3'- -UCUGUCUucUGaGGCGG-GGCGGACGa -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 125999 | 0.66 | 0.759672 |
Target: 5'- gGGGCAGAcAGuuGCUgucuacgaucuucgcCgCGCCUCGCCUGCg -3' miRNA: 3'- -UCUGUCU-UC--UGA---------------G-GCGGGGCGGACGa -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 5450 | 0.66 | 0.765259 |
Target: 5'- cGcCGGAGGAggucCUaaCCGCCCCGCCgcccaGCa -3' miRNA: 3'- uCuGUCUUCU----GA--GGCGGGGCGGa----CGa -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 3348 | 0.66 | 0.773563 |
Target: 5'- uGGC-GAGGgucuuucGCUCCGCUCCGUCUGg- -3' miRNA: 3'- uCUGuCUUC-------UGAGGCGGGGCGGACga -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 151836 | 0.66 | 0.773563 |
Target: 5'- -aGCGGAAGACUggggccgCCGCUCCGgCgGCg -3' miRNA: 3'- ucUGUCUUCUGA-------GGCGGGGCgGaCGa -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 2834 | 0.66 | 0.77448 |
Target: 5'- uGGCGGAGGgccggucgcGCUCgCGCCgUCGCCcGCUg -3' miRNA: 3'- uCUGUCUUC---------UGAG-GCGG-GGCGGaCGA- -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 25689 | 0.66 | 0.783578 |
Target: 5'- gGGACGGGAcGCgcaUGCCCCGCCa--- -3' miRNA: 3'- -UCUGUCUUcUGag-GCGGGGCGGacga -5' |
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24759 | 5' | -59.4 | NC_005264.1 | + | 41186 | 1.07 | 0.001968 |
Target: 5'- gAGACAGAAGACUCCGCCCCGCCUGCUc -3' miRNA: 3'- -UCUGUCUUCUGAGGCGGGGCGGACGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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