Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24760 | 5' | -57.3 | NC_005264.1 | + | 160307 | 1.1 | 0.002042 |
Target: 5'- aCAGCAACCCCCGUCUCGGGAAGUCGCc -3' miRNA: 3'- -GUCGUUGGGGGCAGAGCCCUUCAGCG- -5' |
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24760 | 5' | -57.3 | NC_005264.1 | + | 41280 | 1.1 | 0.002042 |
Target: 5'- aCAGCAACCCCCGUCUCGGGAAGUCGCc -3' miRNA: 3'- -GUCGUUGGGGGCAGAGCCCUUCAGCG- -5' |
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24760 | 5' | -57.3 | NC_005264.1 | + | 152383 | 0.73 | 0.511775 |
Target: 5'- aCGGCGgcggucacucuGCCCUCGUCUaCGacaGGAAGUUGCa -3' miRNA: 3'- -GUCGU-----------UGGGGGCAGA-GC---CCUUCAGCG- -5' |
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24760 | 5' | -57.3 | NC_005264.1 | + | 29908 | 0.73 | 0.521352 |
Target: 5'- gCGGCGcuaCCCCGUCggcgcuaGGGAGGUaCGCg -3' miRNA: 3'- -GUCGUug-GGGGCAGag-----CCCUUCA-GCG- -5' |
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24760 | 5' | -57.3 | NC_005264.1 | + | 107718 | 0.71 | 0.600006 |
Target: 5'- aCGGCGgggugucgaACCCUCGUggCUUGGGcAAGUUGCg -3' miRNA: 3'- -GUCGU---------UGGGGGCA--GAGCCC-UUCAGCG- -5' |
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24760 | 5' | -57.3 | NC_005264.1 | + | 124102 | 0.71 | 0.600006 |
Target: 5'- aGGCGGCCagCCCGUC-CGGGGAGggGUc -3' miRNA: 3'- gUCGUUGG--GGGCAGaGCCCUUCagCG- -5' |
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24760 | 5' | -57.3 | NC_005264.1 | + | 5075 | 0.71 | 0.600006 |
Target: 5'- aGGCGGCCagCCCGUC-CGGGGAGggGUc -3' miRNA: 3'- gUCGUUGG--GGGCAGaGCCCUUCagCG- -5' |
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24760 | 5' | -57.3 | NC_005264.1 | + | 13263 | 0.71 | 0.627039 |
Target: 5'- gAGCAGCCCCCcuccgcccggggcuGUCcgCGGGAgAGUCa- -3' miRNA: 3'- gUCGUUGGGGG--------------CAGa-GCCCU-UCAGcg -5' |
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24760 | 5' | -57.3 | NC_005264.1 | + | 62626 | 0.71 | 0.640073 |
Target: 5'- gAGCAacugcGCCCCgCGgagCUCaGcGAAGUCGCg -3' miRNA: 3'- gUCGU-----UGGGG-GCa--GAGcC-CUUCAGCG- -5' |
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24760 | 5' | -57.3 | NC_005264.1 | + | 148866 | 0.7 | 0.6611 |
Target: 5'- gGGCGACCCCgCGUCUCGcucgucuuccucGUCGCc -3' miRNA: 3'- gUCGUUGGGG-GCAGAGCccuu--------CAGCG- -5' |
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24760 | 5' | -57.3 | NC_005264.1 | + | 37468 | 0.69 | 0.735813 |
Target: 5'- -uGCAGCCCCUGUCccgCGuaucgcacagcuacGGggGcUCGCg -3' miRNA: 3'- guCGUUGGGGGCAGa--GC--------------CCuuC-AGCG- -5' |
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24760 | 5' | -57.3 | NC_005264.1 | + | 156495 | 0.69 | 0.735813 |
Target: 5'- -uGCAGCCCCUGUCccgCGuaucgcacagcuacGGggGcUCGCg -3' miRNA: 3'- guCGUUGGGGGCAGa--GC--------------CCuuC-AGCG- -5' |
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24760 | 5' | -57.3 | NC_005264.1 | + | 39747 | 0.69 | 0.748197 |
Target: 5'- -uGCAACagCCCCGcUgUCGGGAGaucccGUCGCc -3' miRNA: 3'- guCGUUG--GGGGC-AgAGCCCUU-----CAGCG- -5' |
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24760 | 5' | -57.3 | NC_005264.1 | + | 35518 | 0.69 | 0.748197 |
Target: 5'- gCAGguGCCCCCGUCgcccaCGGGcgccuuGUUGg -3' miRNA: 3'- -GUCguUGGGGGCAGa----GCCCuu----CAGCg -5' |
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24760 | 5' | -57.3 | NC_005264.1 | + | 18701 | 0.69 | 0.748197 |
Target: 5'- aAGCAcucuuacgguGCCCCCGUa-UGGGuucuuGGGUCGCu -3' miRNA: 3'- gUCGU----------UGGGGGCAgaGCCC-----UUCAGCG- -5' |
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24760 | 5' | -57.3 | NC_005264.1 | + | 158773 | 0.69 | 0.748197 |
Target: 5'- -uGCAACagCCCCGcUgUCGGGAGaucccGUCGCc -3' miRNA: 3'- guCGUUG--GGGGC-AgAGCCCUU-----CAGCG- -5' |
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24760 | 5' | -57.3 | NC_005264.1 | + | 154545 | 0.69 | 0.748197 |
Target: 5'- gCAGguGCCCCCGUCgcccaCGGGcgccuuGUUGg -3' miRNA: 3'- -GUCguUGGGGGCAGa----GCCCuu----CAGCg -5' |
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24760 | 5' | -57.3 | NC_005264.1 | + | 2768 | 0.69 | 0.757611 |
Target: 5'- cCGGC-GCCguaCCGUCUgGGGAguGGUCGg -3' miRNA: 3'- -GUCGuUGGg--GGCAGAgCCCU--UCAGCg -5' |
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24760 | 5' | -57.3 | NC_005264.1 | + | 121794 | 0.69 | 0.757611 |
Target: 5'- cCGGC-GCCguaCCGUCUgGGGAguGGUCGg -3' miRNA: 3'- -GUCGuUGGg--GGCAGAgCCCU--UCAGCg -5' |
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24760 | 5' | -57.3 | NC_005264.1 | + | 68534 | 0.68 | 0.776113 |
Target: 5'- aGGCAGgCUuuGUCUCGGG--GUCGa -3' miRNA: 3'- gUCGUUgGGggCAGAGCCCuuCAGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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