miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24760 5' -57.3 NC_005264.1 + 2768 0.69 0.757611
Target:  5'- cCGGC-GCCguaCCGUCUgGGGAguGGUCGg -3'
miRNA:   3'- -GUCGuUGGg--GGCAGAgCCCU--UCAGCg -5'
24760 5' -57.3 NC_005264.1 + 3167 0.66 0.894865
Target:  5'- aCGGCGACCCUccgCGUCgcgacggcgCGgGGAAGggcuuauuUCGCa -3'
miRNA:   3'- -GUCGUUGGGG---GCAGa--------GC-CCUUC--------AGCG- -5'
24760 5' -57.3 NC_005264.1 + 5075 0.71 0.600006
Target:  5'- aGGCGGCCagCCCGUC-CGGGGAGggGUc -3'
miRNA:   3'- gUCGUUGG--GGGCAGaGCCCUUCagCG- -5'
24760 5' -57.3 NC_005264.1 + 6103 0.66 0.867324
Target:  5'- aCGGCGGCCauguCUGUUUUGuGGAAGguguUCGCg -3'
miRNA:   3'- -GUCGUUGGg---GGCAGAGC-CCUUC----AGCG- -5'
24760 5' -57.3 NC_005264.1 + 6139 0.66 0.881519
Target:  5'- aAGC-ACCgCCCGUCcUGGGuc-UCGCg -3'
miRNA:   3'- gUCGuUGG-GGGCAGaGCCCuucAGCG- -5'
24760 5' -57.3 NC_005264.1 + 13263 0.71 0.627039
Target:  5'- gAGCAGCCCCCcuccgcccggggcuGUCcgCGGGAgAGUCa- -3'
miRNA:   3'- gUCGUUGGGGG--------------CAGa-GCCCU-UCAGcg -5'
24760 5' -57.3 NC_005264.1 + 18701 0.69 0.748197
Target:  5'- aAGCAcucuuacgguGCCCCCGUa-UGGGuucuuGGGUCGCu -3'
miRNA:   3'- gUCGU----------UGGGGGCAgaGCCC-----UUCAGCG- -5'
24760 5' -57.3 NC_005264.1 + 24386 0.66 0.888301
Target:  5'- gCGGCu-CCCCCGg--CGGcGAGGuagaUCGCg -3'
miRNA:   3'- -GUCGuuGGGGGCagaGCC-CUUC----AGCG- -5'
24760 5' -57.3 NC_005264.1 + 29908 0.73 0.521352
Target:  5'- gCGGCGcuaCCCCGUCggcgcuaGGGAGGUaCGCg -3'
miRNA:   3'- -GUCGUug-GGGGCAGag-----CCCUUCA-GCG- -5'
24760 5' -57.3 NC_005264.1 + 30373 0.66 0.888301
Target:  5'- uCGGCGccGCCgCgucgCGUCUCGGcGGcggcGGUCGCg -3'
miRNA:   3'- -GUCGU--UGGgG----GCAGAGCC-CU----UCAGCG- -5'
24760 5' -57.3 NC_005264.1 + 34051 0.66 0.894865
Target:  5'- aCGGCAGCguuaUCCCGUUgu-GGAAGcCGCg -3'
miRNA:   3'- -GUCGUUG----GGGGCAGagcCCUUCaGCG- -5'
24760 5' -57.3 NC_005264.1 + 35518 0.69 0.748197
Target:  5'- gCAGguGCCCCCGUCgcccaCGGGcgccuuGUUGg -3'
miRNA:   3'- -GUCguUGGGGGCAGa----GCCCuu----CAGCg -5'
24760 5' -57.3 NC_005264.1 + 35871 0.67 0.835736
Target:  5'- cCAGUAGCCCCuccggcuCGUCUCGcGGcAG-CGUu -3'
miRNA:   3'- -GUCGUUGGGG-------GCAGAGC-CCuUCaGCG- -5'
24760 5' -57.3 NC_005264.1 + 37468 0.69 0.735813
Target:  5'- -uGCAGCCCCUGUCccgCGuaucgcacagcuacGGggGcUCGCg -3'
miRNA:   3'- guCGUUGGGGGCAGa--GC--------------CCuuC-AGCG- -5'
24760 5' -57.3 NC_005264.1 + 39747 0.69 0.748197
Target:  5'- -uGCAACagCCCCGcUgUCGGGAGaucccGUCGCc -3'
miRNA:   3'- guCGUUG--GGGGC-AgAGCCCUU-----CAGCG- -5'
24760 5' -57.3 NC_005264.1 + 41280 1.1 0.002042
Target:  5'- aCAGCAACCCCCGUCUCGGGAAGUCGCc -3'
miRNA:   3'- -GUCGUUGGGGGCAGAGCCCUUCAGCG- -5'
24760 5' -57.3 NC_005264.1 + 46146 0.66 0.874526
Target:  5'- gGGCAACCCUCGU---GGcGAAGUCa- -3'
miRNA:   3'- gUCGUUGGGGGCAgagCC-CUUCAGcg -5'
24760 5' -57.3 NC_005264.1 + 51784 0.66 0.894865
Target:  5'- gCGGCGGCaCUUCGUC-CGGcGAGUcCGCg -3'
miRNA:   3'- -GUCGUUG-GGGGCAGaGCCcUUCA-GCG- -5'
24760 5' -57.3 NC_005264.1 + 61081 0.68 0.802917
Target:  5'- gGGCcGCCaCCaCGUCcuUUGGGGAG-CGCg -3'
miRNA:   3'- gUCGuUGG-GG-GCAG--AGCCCUUCaGCG- -5'
24760 5' -57.3 NC_005264.1 + 62626 0.71 0.640073
Target:  5'- gAGCAacugcGCCCCgCGgagCUCaGcGAAGUCGCg -3'
miRNA:   3'- gUCGU-----UGGGG-GCa--GAGcC-CUUCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.