Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24760 | 5' | -57.3 | NC_005264.1 | + | 161939 | 0.68 | 0.802917 |
Target: 5'- cCAGCGGCCCgCGaCaCGGGGccguacacccAGUCGUa -3' miRNA: 3'- -GUCGUUGGGgGCaGaGCCCU----------UCAGCG- -5' |
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24760 | 5' | -57.3 | NC_005264.1 | + | 160307 | 1.1 | 0.002042 |
Target: 5'- aCAGCAACCCCCGUCUCGGGAAGUCGCc -3' miRNA: 3'- -GUCGUUGGGGGCAGAGCCCUUCAGCG- -5' |
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24760 | 5' | -57.3 | NC_005264.1 | + | 158773 | 0.69 | 0.748197 |
Target: 5'- -uGCAACagCCCCGcUgUCGGGAGaucccGUCGCc -3' miRNA: 3'- guCGUUG--GGGGC-AgAGCCCUU-----CAGCG- -5' |
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24760 | 5' | -57.3 | NC_005264.1 | + | 156495 | 0.69 | 0.735813 |
Target: 5'- -uGCAGCCCCUGUCccgCGuaucgcacagcuacGGggGcUCGCg -3' miRNA: 3'- guCGUUGGGGGCAGa--GC--------------CCuuC-AGCG- -5' |
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24760 | 5' | -57.3 | NC_005264.1 | + | 154897 | 0.67 | 0.835736 |
Target: 5'- cCAGUAGCCCCuccggcuCGUCUCGcGGcAG-CGUu -3' miRNA: 3'- -GUCGUUGGGG-------GCAGAGC-CCuUCaGCG- -5' |
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24760 | 5' | -57.3 | NC_005264.1 | + | 154545 | 0.69 | 0.748197 |
Target: 5'- gCAGguGCCCCCGUCgcccaCGGGcgccuuGUUGg -3' miRNA: 3'- -GUCguUGGGGGCAGa----GCCCuu----CAGCg -5' |
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24760 | 5' | -57.3 | NC_005264.1 | + | 152383 | 0.73 | 0.511775 |
Target: 5'- aCGGCGgcggucacucuGCCCUCGUCUaCGacaGGAAGUUGCa -3' miRNA: 3'- -GUCGU-----------UGGGGGCAGA-GC---CCUUCAGCG- -5' |
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24760 | 5' | -57.3 | NC_005264.1 | + | 149400 | 0.66 | 0.888301 |
Target: 5'- uCGGCGccGCCgCgucgCGUCUCGGcGGcggcGGUCGCg -3' miRNA: 3'- -GUCGU--UGGgG----GCAGAGCC-CU----UCAGCG- -5' |
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24760 | 5' | -57.3 | NC_005264.1 | + | 148866 | 0.7 | 0.6611 |
Target: 5'- gGGCGACCCCgCGUCUCGcucgucuuccucGUCGCc -3' miRNA: 3'- gUCGUUGGGG-GCAGAGCccuu--------CAGCG- -5' |
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24760 | 5' | -57.3 | NC_005264.1 | + | 148753 | 0.67 | 0.859919 |
Target: 5'- cCAGCAGCCgUauacauggUUCGGGAAGUCugGCg -3' miRNA: 3'- -GUCGUUGGgGgca-----GAGCCCUUCAG--CG- -5' |
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24760 | 5' | -57.3 | NC_005264.1 | + | 146079 | 0.66 | 0.894865 |
Target: 5'- aCAGCGcGCCCCCG-CgCGGGucuuGGUggacuaCGCa -3' miRNA: 3'- -GUCGU-UGGGGGCaGaGCCCu---UCA------GCG- -5' |
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24760 | 5' | -57.3 | NC_005264.1 | + | 142539 | 0.66 | 0.867324 |
Target: 5'- aCAGCGACCUCagcccCUCGGGGccgcaAG-CGCg -3' miRNA: 3'- -GUCGUUGGGGgca--GAGCCCU-----UCaGCG- -5' |
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24760 | 5' | -57.3 | NC_005264.1 | + | 136929 | 0.66 | 0.88083 |
Target: 5'- aCAGCGcCCCCCGccaUCUguucgccUGGGGcaUCGCa -3' miRNA: 3'- -GUCGUuGGGGGC---AGA-------GCCCUucAGCG- -5' |
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24760 | 5' | -57.3 | NC_005264.1 | + | 132037 | 0.68 | 0.79412 |
Target: 5'- -cGCGACUCCUGUCUgggccCGGG-AGUCa- -3' miRNA: 3'- guCGUUGGGGGCAGA-----GCCCuUCAGcg -5' |
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24760 | 5' | -57.3 | NC_005264.1 | + | 124102 | 0.71 | 0.600006 |
Target: 5'- aGGCGGCCagCCCGUC-CGGGGAGggGUc -3' miRNA: 3'- gUCGUUGG--GGGCAGaGCCCUUCagCG- -5' |
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24760 | 5' | -57.3 | NC_005264.1 | + | 122194 | 0.66 | 0.894865 |
Target: 5'- aCGGCGACCCUccgCGUCgcgacggcgCGgGGAAGggcuuauuUCGCa -3' miRNA: 3'- -GUCGUUGGGG---GCAGa--------GC-CCUUC--------AGCG- -5' |
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24760 | 5' | -57.3 | NC_005264.1 | + | 121794 | 0.69 | 0.757611 |
Target: 5'- cCGGC-GCCguaCCGUCUgGGGAguGGUCGg -3' miRNA: 3'- -GUCGuUGGg--GGCAGAgCCCU--UCAGCg -5' |
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24760 | 5' | -57.3 | NC_005264.1 | + | 114675 | 0.68 | 0.802917 |
Target: 5'- cCAGacGCCUCCGuUCUCGGGcaacgugugagGGGUCGUc -3' miRNA: 3'- -GUCguUGGGGGC-AGAGCCC-----------UUCAGCG- -5' |
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24760 | 5' | -57.3 | NC_005264.1 | + | 113239 | 0.67 | 0.844523 |
Target: 5'- gAGCGcCCCCCGUCguccu-GGUCGCc -3' miRNA: 3'- gUCGUuGGGGGCAGagcccuUCAGCG- -5' |
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24760 | 5' | -57.3 | NC_005264.1 | + | 107718 | 0.71 | 0.600006 |
Target: 5'- aCGGCGgggugucgaACCCUCGUggCUUGGGcAAGUUGCg -3' miRNA: 3'- -GUCGU---------UGGGGGCA--GAGCCC-UUCAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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