miRNA display CGI


Results 41 - 60 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24761 3' -57.9 NC_005264.1 + 130415 0.67 0.79412
Target:  5'- aCCGGUUCCGuagaauuuacuuGGAAGAGCcgauGCGCGCg -3'
miRNA:   3'- gGGUCGAGGC------------CCUUCUUGcc--CGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 128694 0.67 0.79412
Target:  5'- gUCUAGCgaggCCuugGGGGAG-GCGGGCuCGCg -3'
miRNA:   3'- -GGGUCGa---GG---CCCUUCuUGCCCGuGUG- -5'
24761 3' -57.9 NC_005264.1 + 9667 0.67 0.79412
Target:  5'- gUCUAGCgaggCCuugGGGGAG-GCGGGCuCGCg -3'
miRNA:   3'- -GGGUCGa---GG---CCCUUCuUGCCCGuGUG- -5'
24761 3' -57.9 NC_005264.1 + 79995 0.67 0.802917
Target:  5'- gCCGGC-CgCGcGGAAGAggagGCGcGGCACAUc -3'
miRNA:   3'- gGGUCGaG-GC-CCUUCU----UGC-CCGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 31518 0.67 0.802917
Target:  5'- cUCCAgGCUCgggCGGGGAGGGCcguugggguggGGGCGgACg -3'
miRNA:   3'- -GGGU-CGAG---GCCCUUCUUG-----------CCCGUgUG- -5'
24761 3' -57.9 NC_005264.1 + 150545 0.67 0.802917
Target:  5'- cUCCAgGCUCgggCGGGGAGGGCcguugggguggGGGCGgACg -3'
miRNA:   3'- -GGGU-CGAG---GCCCUUCUUG-----------CCCGUgUG- -5'
24761 3' -57.9 NC_005264.1 + 16570 0.67 0.802917
Target:  5'- -gCGGCgCCGGGgcG-GCGGcGCACAUg -3'
miRNA:   3'- ggGUCGaGGCCCuuCuUGCC-CGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 98231 0.67 0.802917
Target:  5'- gCCGcGCUgCGGaGAGGuuAUGGGCGCAa -3'
miRNA:   3'- gGGU-CGAgGCC-CUUCu-UGCCCGUGUg -5'
24761 3' -57.9 NC_005264.1 + 58665 0.67 0.802917
Target:  5'- gCCAGCUCCucaacuugcuGGAGGA---GGCACGCg -3'
miRNA:   3'- gGGUCGAGGc---------CCUUCUugcCCGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 46755 0.67 0.811566
Target:  5'- aUCuGUaCCGGGuAG-AUGGGCACGCg -3'
miRNA:   3'- gGGuCGaGGCCCuUCuUGCCCGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 157736 0.67 0.811566
Target:  5'- uCCCAGCUCgcccccaGGcguaGAGGAccccuccccggACGGGCugGCc -3'
miRNA:   3'- -GGGUCGAGg------CC----CUUCU-----------UGCCCGugUG- -5'
24761 3' -57.9 NC_005264.1 + 122064 0.67 0.811566
Target:  5'- uCUCGGCgCCGcGGAAGAuguaGGGgACAUa -3'
miRNA:   3'- -GGGUCGaGGC-CCUUCUug--CCCgUGUG- -5'
24761 3' -57.9 NC_005264.1 + 38710 0.67 0.811566
Target:  5'- uCCCAGCUCgcccccaGGcguaGAGGAccccuccccggACGGGCugGCc -3'
miRNA:   3'- -GGGUCGAGg------CC----CUUCU-----------UGCCCGugUG- -5'
24761 3' -57.9 NC_005264.1 + 543 0.67 0.819216
Target:  5'- aCCCAGCcaUCC-GGAAGAgacggcgACGuGGUACAg -3'
miRNA:   3'- -GGGUCG--AGGcCCUUCU-------UGC-CCGUGUg -5'
24761 3' -57.9 NC_005264.1 + 31756 0.67 0.828387
Target:  5'- gCCUuuGGCUcgcaCCGGGAuGGuucGCGGGCGCu- -3'
miRNA:   3'- -GGG--UCGA----GGCCCUuCU---UGCCCGUGug -5'
24761 3' -57.9 NC_005264.1 + 150782 0.67 0.828387
Target:  5'- gCCUuuGGCUcgcaCCGGGAuGGuucGCGGGCGCu- -3'
miRNA:   3'- -GGG--UCGA----GGCCCUuCU---UGCCCGUGug -5'
24761 3' -57.9 NC_005264.1 + 41425 0.66 0.836544
Target:  5'- gCCGGCgCCGGGcuccuGCGGGCGacggcCACu -3'
miRNA:   3'- gGGUCGaGGCCCuucu-UGCCCGU-----GUG- -5'
24761 3' -57.9 NC_005264.1 + 43149 0.66 0.836544
Target:  5'- aCgGGUggagCgGGGAGGGGgGGGCGCGu -3'
miRNA:   3'- gGgUCGa---GgCCCUUCUUgCCCGUGUg -5'
24761 3' -57.9 NC_005264.1 + 105483 0.66 0.836544
Target:  5'- cUCCAGCgacgacggcgaUCCGGcGGAGGAagaGGauGCGCGCg -3'
miRNA:   3'- -GGGUCG-----------AGGCC-CUUCUUg--CC--CGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 14048 0.66 0.836544
Target:  5'- aCgUGGCggggCCGGGuGGGAACGuGCACGCc -3'
miRNA:   3'- -GgGUCGa---GGCCC-UUCUUGCcCGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.