Results 21 - 40 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24761 | 3' | -57.9 | NC_005264.1 | + | 98090 | 0.69 | 0.670085 |
Target: 5'- cCCCGGCcgccCCGGGGuu-ACcgGGGUACACa -3' miRNA: 3'- -GGGUCGa---GGCCCUucuUG--CCCGUGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 14502 | 0.69 | 0.670085 |
Target: 5'- cCCCGGC-CCGGGGcacGGucuauauccCGGGcCACGCg -3' miRNA: 3'- -GGGUCGaGGCCCU---UCuu-------GCCC-GUGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 27327 | 0.69 | 0.680041 |
Target: 5'- gUCCAGCcccguuaCCGGGAAGAA--GGCGCAa -3' miRNA: 3'- -GGGUCGa------GGCCCUUCUUgcCCGUGUg -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 68002 | 0.69 | 0.688969 |
Target: 5'- aCCGGCUCguugcggggguCGGGcagaucuucgagaGGGGugGGGCACAg -3' miRNA: 3'- gGGUCGAG-----------GCCC-------------UUCUugCCCGUGUg -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 141495 | 0.69 | 0.689959 |
Target: 5'- -gCGGC-CCGGGAcGAACGGcaGCGCAa -3' miRNA: 3'- ggGUCGaGGCCCUuCUUGCC--CGUGUg -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 145915 | 0.69 | 0.689959 |
Target: 5'- -aCAGCUCCGGcGgcGGgucagcGCGGGCAUg- -3' miRNA: 3'- ggGUCGAGGCC-CuuCU------UGCCCGUGug -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 148751 | 0.69 | 0.706708 |
Target: 5'- gCCCAGCagccguauacauggUUCGGGAAGucUGGcGUGCACg -3' miRNA: 3'- -GGGUCG--------------AGGCCCUUCuuGCC-CGUGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 137980 | 0.69 | 0.709647 |
Target: 5'- cCCCGGCUCCGGuAAGAcuucgccguGCGGaaGCAg -3' miRNA: 3'- -GGGUCGAGGCCcUUCU---------UGCCcgUGUg -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 3609 | 0.69 | 0.718428 |
Target: 5'- aCC-GC-CgCGGGGggccgcgAGGGCGGGCGCGCu -3' miRNA: 3'- gGGuCGaG-GCCCU-------UCUUGCCCGUGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 122636 | 0.69 | 0.718428 |
Target: 5'- aCC-GC-CgCGGGGggccgcgAGGGCGGGCGCGCu -3' miRNA: 3'- gGGuCGaG-GCCCU-------UCUUGCCCGUGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 119118 | 0.68 | 0.729083 |
Target: 5'- gCgGGCUCUgcugGGGGAGGGCGaGGaCGCAUg -3' miRNA: 3'- gGgUCGAGG----CCCUUCUUGC-CC-GUGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 26969 | 0.68 | 0.729083 |
Target: 5'- gCUUGGCguagauUCCGGGAuuuGACGuGGCACGCg -3' miRNA: 3'- -GGGUCG------AGGCCCUuc-UUGC-CCGUGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 22833 | 0.68 | 0.738684 |
Target: 5'- cCUCAGCgagaCGGGuacGGACGGGCgaggccGCGCg -3' miRNA: 3'- -GGGUCGag--GCCCuu-CUUGCCCG------UGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 160887 | 0.68 | 0.738684 |
Target: 5'- --gAGCUCgGGGggGGgggcaACGGccGCGCACa -3' miRNA: 3'- gggUCGAGgCCCuuCU-----UGCC--CGUGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 41861 | 0.68 | 0.738684 |
Target: 5'- --gAGCUCgGGGggGGgggcaACGGccGCGCACa -3' miRNA: 3'- gggUCGAGgCCCuuCU-----UGCC--CGUGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 5080 | 0.68 | 0.757611 |
Target: 5'- gCCAGCccgUCCGGGGAGGGguccucuacgccUGGGgGCGa -3' miRNA: 3'- gGGUCG---AGGCCCUUCUU------------GCCCgUGUg -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 55936 | 0.68 | 0.757611 |
Target: 5'- aCCCGGCUUCuGGAAc--UGGGUGCGCu -3' miRNA: 3'- -GGGUCGAGGcCCUUcuuGCCCGUGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 124107 | 0.68 | 0.757611 |
Target: 5'- gCCAGCccgUCCGGGGAGGGguccucuacgccUGGGgGCGa -3' miRNA: 3'- gGGUCG---AGGCCCUUCUU------------GCCCgUGUg -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 80602 | 0.68 | 0.77245 |
Target: 5'- aCUCGGC-CCGGGggGGAgcguucuUGGGCcccgaggacgauggACGCg -3' miRNA: 3'- -GGGUCGaGGCCCuuCUU-------GCCCG--------------UGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 107209 | 0.67 | 0.785182 |
Target: 5'- uUCCGGCguaUGGGuacgcGGAGCGGuGCGCAa -3' miRNA: 3'- -GGGUCGag-GCCCu----UCUUGCC-CGUGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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