miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24761 3' -57.9 NC_005264.1 + 31756 0.67 0.828387
Target:  5'- gCCUuuGGCUcgcaCCGGGAuGGuucGCGGGCGCu- -3'
miRNA:   3'- -GGG--UCGA----GGCCCUuCU---UGCCCGUGug -5'
24761 3' -57.9 NC_005264.1 + 33928 0.71 0.590029
Target:  5'- gCCAGg-CUGGGAAGGcCGuGGCGCGCc -3'
miRNA:   3'- gGGUCgaGGCCCUUCUuGC-CCGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 34251 0.7 0.650094
Target:  5'- aCCCGGCUUCuguaGcGAGGcGCGGGCgACGCg -3'
miRNA:   3'- -GGGUCGAGGc---C-CUUCuUGCCCG-UGUG- -5'
24761 3' -57.9 NC_005264.1 + 38710 0.67 0.811566
Target:  5'- uCCCAGCUCgcccccaGGcguaGAGGAccccuccccggACGGGCugGCc -3'
miRNA:   3'- -GGGUCGAGg------CC----CUUCU-----------UGCCCGugUG- -5'
24761 3' -57.9 NC_005264.1 + 41362 1.11 0.001473
Target:  5'- gCCCAGCUCCGGGAAGAACGGGCACACg -3'
miRNA:   3'- -GGGUCGAGGCCCUUCUUGCCCGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 41425 0.66 0.836544
Target:  5'- gCCGGCgCCGGGcuccuGCGGGCGacggcCACu -3'
miRNA:   3'- gGGUCGaGGCCCuucu-UGCCCGU-----GUG- -5'
24761 3' -57.9 NC_005264.1 + 41650 0.66 0.844523
Target:  5'- -gCAGCgcggCCGGGucuAAGGACGuGCGCAUc -3'
miRNA:   3'- ggGUCGa---GGCCC---UUCUUGCcCGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 41861 0.68 0.738684
Target:  5'- --gAGCUCgGGGggGGgggcaACGGccGCGCACa -3'
miRNA:   3'- gggUCGAGgCCCuuCU-----UGCC--CGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 43149 0.66 0.836544
Target:  5'- aCgGGUggagCgGGGAGGGGgGGGCGCGu -3'
miRNA:   3'- gGgUCGa---GgCCCUUCUUgCCCGUGUg -5'
24761 3' -57.9 NC_005264.1 + 46755 0.67 0.811566
Target:  5'- aUCuGUaCCGGGuAG-AUGGGCACGCg -3'
miRNA:   3'- gGGuCGaGGCCCuUCuUGCCCGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 55936 0.68 0.757611
Target:  5'- aCCCGGCUUCuGGAAc--UGGGUGCGCu -3'
miRNA:   3'- -GGGUCGAGGcCCUUcuuGCCCGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 58665 0.67 0.802917
Target:  5'- gCCAGCUCCucaacuugcuGGAGGA---GGCACGCg -3'
miRNA:   3'- gGGUCGAGGc---------CCUUCUugcCCGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 60853 0.73 0.483503
Target:  5'- -gCAGCUUCGGcGGAGAucugAUGGGCACGg -3'
miRNA:   3'- ggGUCGAGGCC-CUUCU----UGCCCGUGUg -5'
24761 3' -57.9 NC_005264.1 + 64749 0.72 0.550477
Target:  5'- cCCCGGUaaccCCGGGgcGGcCgGGGCACACc -3'
miRNA:   3'- -GGGUCGa---GGCCCuuCUuG-CCCGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 68002 0.69 0.688969
Target:  5'- aCCGGCUCguugcggggguCGGGcagaucuucgagaGGGGugGGGCACAg -3'
miRNA:   3'- gGGUCGAG-----------GCCC-------------UUCUugCCCGUGUg -5'
24761 3' -57.9 NC_005264.1 + 68399 0.74 0.420696
Target:  5'- aCUcGCUCUGcGGGAGGACGGGCugcuCGCu -3'
miRNA:   3'- gGGuCGAGGC-CCUUCUUGCCCGu---GUG- -5'
24761 3' -57.9 NC_005264.1 + 76694 0.69 0.670085
Target:  5'- gCCCAGCUUgGcGcGGAGCGcGGCGCAa -3'
miRNA:   3'- -GGGUCGAGgCcCuUCUUGC-CCGUGUg -5'
24761 3' -57.9 NC_005264.1 + 79093 0.66 0.859919
Target:  5'- gUCAGCUuaCCGGGGAG-ACGcuuaagcucGGCACGg -3'
miRNA:   3'- gGGUCGA--GGCCCUUCuUGC---------CCGUGUg -5'
24761 3' -57.9 NC_005264.1 + 79995 0.67 0.802917
Target:  5'- gCCGGC-CgCGcGGAAGAggagGCGcGGCACAUc -3'
miRNA:   3'- gGGUCGaG-GC-CCUUCU----UGC-CCGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 80602 0.68 0.77245
Target:  5'- aCUCGGC-CCGGGggGGAgcguucuUGGGCcccgaggacgauggACGCg -3'
miRNA:   3'- -GGGUCGaGGCCCuuCUU-------GCCCG--------------UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.