miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24761 3' -57.9 NC_005264.1 + 543 0.67 0.819216
Target:  5'- aCCCAGCcaUCC-GGAAGAgacggcgACGuGGUACAg -3'
miRNA:   3'- -GGGUCG--AGGcCCUUCU-------UGC-CCGUGUg -5'
24761 3' -57.9 NC_005264.1 + 2502 0.71 0.580081
Target:  5'- uUCUAGCacacaugCCGGGGAGGuacaGGGUGCGCa -3'
miRNA:   3'- -GGGUCGa------GGCCCUUCUug--CCCGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 3609 0.69 0.718428
Target:  5'- aCC-GC-CgCGGGGggccgcgAGGGCGGGCGCGCu -3'
miRNA:   3'- gGGuCGaG-GCCCU-------UCUUGCCCGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 4746 0.66 0.852317
Target:  5'- gCCGGCgUCCGGGGGuGGACcGcCGCGCg -3'
miRNA:   3'- gGGUCG-AGGCCCUU-CUUGcCcGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 5080 0.68 0.757611
Target:  5'- gCCAGCccgUCCGGGGAGGGguccucuacgccUGGGgGCGa -3'
miRNA:   3'- gGGUCG---AGGCCCUUCUU------------GCCCgUGUg -5'
24761 3' -57.9 NC_005264.1 + 6010 0.66 0.844523
Target:  5'- cCCCgacgggcggggaGGCUCCGGGGAaAACcaacGGCGCGa -3'
miRNA:   3'- -GGG------------UCGAGGCCCUUcUUGc---CCGUGUg -5'
24761 3' -57.9 NC_005264.1 + 6126 0.66 0.859919
Target:  5'- aUCAGgUgCGGGAGGGcgaGGGcCGCGCg -3'
miRNA:   3'- gGGUCgAgGCCCUUCUug-CCC-GUGUG- -5'
24761 3' -57.9 NC_005264.1 + 9667 0.67 0.79412
Target:  5'- gUCUAGCgaggCCuugGGGGAG-GCGGGCuCGCg -3'
miRNA:   3'- -GGGUCGa---GG---CCCUUCuUGCCCGuGUG- -5'
24761 3' -57.9 NC_005264.1 + 11342 0.66 0.836544
Target:  5'- aCC-GUUCUGGcGAGGAACugccaucugGGGCAUGCg -3'
miRNA:   3'- gGGuCGAGGCC-CUUCUUG---------CCCGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 13084 0.72 0.550477
Target:  5'- aCCUugGGCUCCGaGGAuuccGAACGGaGCGCGg -3'
miRNA:   3'- -GGG--UCGAGGC-CCUu---CUUGCC-CGUGUg -5'
24761 3' -57.9 NC_005264.1 + 14048 0.66 0.836544
Target:  5'- aCgUGGCggggCCGGGuGGGAACGuGCACGCc -3'
miRNA:   3'- -GgGUCGa---GGCCC-UUCUUGCcCGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 14502 0.69 0.670085
Target:  5'- cCCCGGC-CCGGGGcacGGucuauauccCGGGcCACGCg -3'
miRNA:   3'- -GGGUCGaGGCCCU---UCuu-------GCCC-GUGUG- -5'
24761 3' -57.9 NC_005264.1 + 16570 0.67 0.802917
Target:  5'- -gCGGCgCCGGGgcG-GCGGcGCACAUg -3'
miRNA:   3'- ggGUCGaGGCCCuuCuUGCC-CGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 22833 0.68 0.738684
Target:  5'- cCUCAGCgagaCGGGuacGGACGGGCgaggccGCGCg -3'
miRNA:   3'- -GGGUCGag--GCCCuu-CUUGCCCG------UGUG- -5'
24761 3' -57.9 NC_005264.1 + 25664 0.7 0.650094
Target:  5'- aUCGGCacgUCUGGGGgcagcagaaGGGACGGGaCGCGCa -3'
miRNA:   3'- gGGUCG---AGGCCCU---------UCUUGCCC-GUGUG- -5'
24761 3' -57.9 NC_005264.1 + 26969 0.68 0.729083
Target:  5'- gCUUGGCguagauUCCGGGAuuuGACGuGGCACGCg -3'
miRNA:   3'- -GGGUCG------AGGCCCUuc-UUGC-CCGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 27327 0.69 0.680041
Target:  5'- gUCCAGCcccguuaCCGGGAAGAA--GGCGCAa -3'
miRNA:   3'- -GGGUCGa------GGCCCUUCUUgcCCGUGUg -5'
24761 3' -57.9 NC_005264.1 + 27919 0.72 0.530998
Target:  5'- gCCgAGCUCCuGGGGAcGAgcaguucccaACGGGCGcCGCg -3'
miRNA:   3'- -GGgUCGAGG-CCCUU-CU----------UGCCCGU-GUG- -5'
24761 3' -57.9 NC_005264.1 + 29409 0.78 0.24133
Target:  5'- gCCAGCUCCGGGAAGAACauGUcCGCg -3'
miRNA:   3'- gGGUCGAGGCCCUUCUUGccCGuGUG- -5'
24761 3' -57.9 NC_005264.1 + 31518 0.67 0.802917
Target:  5'- cUCCAgGCUCgggCGGGGAGGGCcguugggguggGGGCGgACg -3'
miRNA:   3'- -GGGU-CGAG---GCCCUUCUUG-----------CCCGUgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.