miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24761 3' -57.9 NC_005264.1 + 162176 0.66 0.836544
Target:  5'- aCgGGUggagCgGGGAGGGGgGGGCGCGu -3'
miRNA:   3'- gGgUCGa---GgCCCUUCUUgCCCGUGUg -5'
24761 3' -57.9 NC_005264.1 + 160887 0.68 0.738684
Target:  5'- --gAGCUCgGGGggGGgggcaACGGccGCGCACa -3'
miRNA:   3'- gggUCGAGgCCCuuCU-----UGCC--CGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 160452 0.66 0.836544
Target:  5'- gCCGGCgCCGGGcuccuGCGGGCGacggcCACu -3'
miRNA:   3'- gGGUCGaGGCCCuucu-UGCCCGU-----GUG- -5'
24761 3' -57.9 NC_005264.1 + 160389 1.11 0.001473
Target:  5'- gCCCAGCUCCGGGAAGAACGGGCACACg -3'
miRNA:   3'- -GGGUCGAGGCCCUUCUUGCCCGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 157736 0.67 0.811566
Target:  5'- uCCCAGCUCgcccccaGGcguaGAGGAccccuccccggACGGGCugGCc -3'
miRNA:   3'- -GGGUCGAGg------CC----CUUCU-----------UGCCCGugUG- -5'
24761 3' -57.9 NC_005264.1 + 153278 0.7 0.650094
Target:  5'- aCCCGGCUUCuguaGcGAGGcGCGGGCgACGCg -3'
miRNA:   3'- -GGGUCGAGGc---C-CUUCuUGCCCG-UGUG- -5'
24761 3' -57.9 NC_005264.1 + 152954 0.74 0.429369
Target:  5'- gCCAGggCUGGGAAGGcCGuGGCGCGCc -3'
miRNA:   3'- gGGUCgaGGCCCUUCUuGC-CCGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 150782 0.67 0.828387
Target:  5'- gCCUuuGGCUcgcaCCGGGAuGGuucGCGGGCGCu- -3'
miRNA:   3'- -GGG--UCGA----GGCCCUuCU---UGCCCGUGug -5'
24761 3' -57.9 NC_005264.1 + 150545 0.67 0.802917
Target:  5'- cUCCAgGCUCgggCGGGGAGGGCcguugggguggGGGCGgACg -3'
miRNA:   3'- -GGGU-CGAG---GCCCUUCUUG-----------CCCGUgUG- -5'
24761 3' -57.9 NC_005264.1 + 148751 0.69 0.706708
Target:  5'- gCCCAGCagccguauacauggUUCGGGAAGucUGGcGUGCACg -3'
miRNA:   3'- -GGGUCG--------------AGGCCCUUCuuGCC-CGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 145915 0.69 0.689959
Target:  5'- -aCAGCUCCGGcGgcGGgucagcGCGGGCAUg- -3'
miRNA:   3'- ggGUCGAGGCC-CuuCU------UGCCCGUGug -5'
24761 3' -57.9 NC_005264.1 + 141495 0.69 0.689959
Target:  5'- -gCGGC-CCGGGAcGAACGGcaGCGCAa -3'
miRNA:   3'- ggGUCGaGGCCCUuCUUGCC--CGUGUg -5'
24761 3' -57.9 NC_005264.1 + 137980 0.69 0.709647
Target:  5'- cCCCGGCUCCGGuAAGAcuucgccguGCGGaaGCAg -3'
miRNA:   3'- -GGGUCGAGGCCcUUCU---------UGCCcgUGUg -5'
24761 3' -57.9 NC_005264.1 + 132111 0.72 0.550477
Target:  5'- aCCUugGGCUCCGaGGAuuccGAACGGaGCGCGg -3'
miRNA:   3'- -GGG--UCGAGGC-CCUu---CUUGCC-CGUGUg -5'
24761 3' -57.9 NC_005264.1 + 130415 0.67 0.79412
Target:  5'- aCCGGUUCCGuagaauuuacuuGGAAGAGCcgauGCGCGCg -3'
miRNA:   3'- gGGUCGAGGC------------CCUUCUUGcc--CGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 130369 0.66 0.836544
Target:  5'- aCC-GUUCUGGcGAGGAACugccaucugGGGCAUGCg -3'
miRNA:   3'- gGGuCGAGGCC-CUUCUUG---------CCCGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 128694 0.67 0.79412
Target:  5'- gUCUAGCgaggCCuugGGGGAG-GCGGGCuCGCg -3'
miRNA:   3'- -GGGUCGa---GG---CCCUUCuUGCCCGuGUG- -5'
24761 3' -57.9 NC_005264.1 + 128103 0.69 0.670085
Target:  5'- aCCGGCgcgCCGGGAAGAACGccaACGa -3'
miRNA:   3'- gGGUCGa--GGCCCUUCUUGCccgUGUg -5'
24761 3' -57.9 NC_005264.1 + 125153 0.66 0.859919
Target:  5'- aUCAGgUgCGGGAGGGcgaGGGcCGCGCg -3'
miRNA:   3'- gGGUCgAgGCCCUUCUug-CCC-GUGUG- -5'
24761 3' -57.9 NC_005264.1 + 125037 0.66 0.844523
Target:  5'- cCCCgacgggcggggaGGCUCCGGGGAaAACcaacGGCGCGa -3'
miRNA:   3'- -GGG------------UCGAGGCCCUUcUUGc---CCGUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.