Results 1 - 20 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24761 | 3' | -57.9 | NC_005264.1 | + | 128694 | 0.67 | 0.79412 |
Target: 5'- gUCUAGCgaggCCuugGGGGAG-GCGGGCuCGCg -3' miRNA: 3'- -GGGUCGa---GG---CCCUUCuUGCCCGuGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 27327 | 0.69 | 0.680041 |
Target: 5'- gUCCAGCcccguuaCCGGGAAGAA--GGCGCAa -3' miRNA: 3'- -GGGUCGa------GGCCCUUCUUgcCCGUGUg -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 145915 | 0.69 | 0.689959 |
Target: 5'- -aCAGCUCCGGcGgcGGgucagcGCGGGCAUg- -3' miRNA: 3'- ggGUCGAGGCC-CuuCU------UGCCCGUGug -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 122636 | 0.69 | 0.718428 |
Target: 5'- aCC-GC-CgCGGGGggccgcgAGGGCGGGCGCGCu -3' miRNA: 3'- gGGuCGaG-GCCCU-------UCUUGCCCGUGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 26969 | 0.68 | 0.729083 |
Target: 5'- gCUUGGCguagauUCCGGGAuuuGACGuGGCACGCg -3' miRNA: 3'- -GGGUCG------AGGCCCUuc-UUGC-CCGUGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 22833 | 0.68 | 0.738684 |
Target: 5'- cCUCAGCgagaCGGGuacGGACGGGCgaggccGCGCg -3' miRNA: 3'- -GGGUCGag--GCCCuu-CUUGCCCG------UGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 160887 | 0.68 | 0.738684 |
Target: 5'- --gAGCUCgGGGggGGgggcaACGGccGCGCACa -3' miRNA: 3'- gggUCGAGgCCCuuCU-----UGCC--CGUGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 55936 | 0.68 | 0.757611 |
Target: 5'- aCCCGGCUUCuGGAAc--UGGGUGCGCu -3' miRNA: 3'- -GGGUCGAGGcCCUUcuuGCCCGUGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 124107 | 0.68 | 0.757611 |
Target: 5'- gCCAGCccgUCCGGGGAGGGguccucuacgccUGGGgGCGa -3' miRNA: 3'- gGGUCG---AGGCCCUUCUU------------GCCCgUGUg -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 98090 | 0.69 | 0.670085 |
Target: 5'- cCCCGGCcgccCCGGGGuu-ACcgGGGUACACa -3' miRNA: 3'- -GGGUCGa---GGCCCUucuUG--CCCGUGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 14502 | 0.69 | 0.670085 |
Target: 5'- cCCCGGC-CCGGGGcacGGucuauauccCGGGcCACGCg -3' miRNA: 3'- -GGGUCGaGGCCCU---UCuu-------GCCC-GUGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 76694 | 0.69 | 0.670085 |
Target: 5'- gCCCAGCUUgGcGcGGAGCGcGGCGCAa -3' miRNA: 3'- -GGGUCGAGgCcCuUCUUGC-CCGUGUg -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 29409 | 0.78 | 0.24133 |
Target: 5'- gCCAGCUCCGGGAAGAACauGUcCGCg -3' miRNA: 3'- gGGUCGAGGCCCUUCUUGccCGuGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 110819 | 0.75 | 0.38709 |
Target: 5'- gCCUAGCgUUCGGGucuGAGCGGGguCGCu -3' miRNA: 3'- -GGGUCG-AGGCCCuu-CUUGCCCguGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 68399 | 0.74 | 0.420696 |
Target: 5'- aCUcGCUCUGcGGGAGGACGGGCugcuCGCu -3' miRNA: 3'- gGGuCGAGGC-CCUUCUUGCCCGu---GUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 152954 | 0.74 | 0.429369 |
Target: 5'- gCCAGggCUGGGAAGGcCGuGGCGCGCc -3' miRNA: 3'- gGGUCgaGGCCCUUCUuGC-CCGUGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 132111 | 0.72 | 0.550477 |
Target: 5'- aCCUugGGCUCCGaGGAuuccGAACGGaGCGCGg -3' miRNA: 3'- -GGG--UCGAGGC-CCUu---CUUGCC-CGUGUg -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 2502 | 0.71 | 0.580081 |
Target: 5'- uUCUAGCacacaugCCGGGGAGGuacaGGGUGCGCa -3' miRNA: 3'- -GGGUCGa------GGCCCUUCUug--CCCGUGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 118634 | 0.7 | 0.630047 |
Target: 5'- -aCAGCUCUGGGGAGGGgGGGgGgGa -3' miRNA: 3'- ggGUCGAGGCCCUUCUUgCCCgUgUg -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 153278 | 0.7 | 0.650094 |
Target: 5'- aCCCGGCUUCuguaGcGAGGcGCGGGCgACGCg -3' miRNA: 3'- -GGGUCGAGGc---C-CUUCuUGCCCG-UGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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