miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24761 3' -57.9 NC_005264.1 + 101401 0.66 0.867324
Target:  5'- aCUCGGCgCC--GAGGAGCGGGC-CGCc -3'
miRNA:   3'- -GGGUCGaGGccCUUCUUGCCCGuGUG- -5'
24761 3' -57.9 NC_005264.1 + 5080 0.68 0.757611
Target:  5'- gCCAGCccgUCCGGGGAGGGguccucuacgccUGGGgGCGa -3'
miRNA:   3'- gGGUCG---AGGCCCUUCUU------------GCCCgUGUg -5'
24761 3' -57.9 NC_005264.1 + 119118 0.68 0.729083
Target:  5'- gCgGGCUCUgcugGGGGAGGGCGaGGaCGCAUg -3'
miRNA:   3'- gGgUCGAGG----CCCUUCUUGC-CC-GUGUG- -5'
24761 3' -57.9 NC_005264.1 + 41362 1.11 0.001473
Target:  5'- gCCCAGCUCCGGGAAGAACGGGCACACg -3'
miRNA:   3'- -GGGUCGAGGCCCUUCUUGCCCGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 41425 0.66 0.836544
Target:  5'- gCCGGCgCCGGGcuccuGCGGGCGacggcCACu -3'
miRNA:   3'- gGGUCGaGGCCCuucu-UGCCCGU-----GUG- -5'
24761 3' -57.9 NC_005264.1 + 11342 0.66 0.836544
Target:  5'- aCC-GUUCUGGcGAGGAACugccaucugGGGCAUGCg -3'
miRNA:   3'- gGGuCGAGGCC-CUUCUUG---------CCCGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 43149 0.66 0.836544
Target:  5'- aCgGGUggagCgGGGAGGGGgGGGCGCGu -3'
miRNA:   3'- gGgUCGa---GgCCCUUCUUgCCCGUGUg -5'
24761 3' -57.9 NC_005264.1 + 31756 0.67 0.828387
Target:  5'- gCCUuuGGCUcgcaCCGGGAuGGuucGCGGGCGCu- -3'
miRNA:   3'- -GGG--UCGA----GGCCCUuCU---UGCCCGUGug -5'
24761 3' -57.9 NC_005264.1 + 79995 0.67 0.802917
Target:  5'- gCCGGC-CgCGcGGAAGAggagGCGcGGCACAUc -3'
miRNA:   3'- gGGUCGaG-GC-CCUUCU----UGC-CCGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 80602 0.68 0.77245
Target:  5'- aCUCGGC-CCGGGggGGAgcguucuUGGGCcccgaggacgauggACGCg -3'
miRNA:   3'- -GGGUCGaGGCCCuuCUU-------GCCCG--------------UGUG- -5'
24761 3' -57.9 NC_005264.1 + 130415 0.67 0.79412
Target:  5'- aCCGGUUCCGuagaauuuacuuGGAAGAGCcgauGCGCGCg -3'
miRNA:   3'- gGGUCGAGGC------------CCUUCUUGcc--CGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 122064 0.67 0.811566
Target:  5'- uCUCGGCgCCGcGGAAGAuguaGGGgACAUa -3'
miRNA:   3'- -GGGUCGaGGC-CCUUCUug--CCCgUGUG- -5'
24761 3' -57.9 NC_005264.1 + 4746 0.66 0.852317
Target:  5'- gCCGGCgUCCGGGGGuGGACcGcCGCGCg -3'
miRNA:   3'- gGGUCG-AGGCCCUU-CUUGcCcGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 9667 0.67 0.79412
Target:  5'- gUCUAGCgaggCCuugGGGGAG-GCGGGCuCGCg -3'
miRNA:   3'- -GGGUCGa---GG---CCCUUCuUGCCCGuGUG- -5'
24761 3' -57.9 NC_005264.1 + 6126 0.66 0.859919
Target:  5'- aUCAGgUgCGGGAGGGcgaGGGcCGCGCg -3'
miRNA:   3'- gGGUCgAgGCCCUUCUug-CCC-GUGUG- -5'
24761 3' -57.9 NC_005264.1 + 38710 0.67 0.811566
Target:  5'- uCCCAGCUCgcccccaGGcguaGAGGAccccuccccggACGGGCugGCc -3'
miRNA:   3'- -GGGUCGAGg------CC----CUUCU-----------UGCCCGugUG- -5'
24761 3' -57.9 NC_005264.1 + 107209 0.67 0.785182
Target:  5'- uUCCGGCguaUGGGuacgcGGAGCGGuGCGCAa -3'
miRNA:   3'- -GGGUCGag-GCCCu----UCUUGCC-CGUGUg -5'
24761 3' -57.9 NC_005264.1 + 41861 0.68 0.738684
Target:  5'- --gAGCUCgGGGggGGgggcaACGGccGCGCACa -3'
miRNA:   3'- gggUCGAGgCCCuuCU-----UGCC--CGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 6010 0.66 0.844523
Target:  5'- cCCCgacgggcggggaGGCUCCGGGGAaAACcaacGGCGCGa -3'
miRNA:   3'- -GGG------------UCGAGGCCCUUcUUGc---CCGUGUg -5'
24761 3' -57.9 NC_005264.1 + 105483 0.66 0.836544
Target:  5'- cUCCAGCgacgacggcgaUCCGGcGGAGGAagaGGauGCGCGCg -3'
miRNA:   3'- -GGGUCG-----------AGGCC-CUUCUUg--CC--CGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.