miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24761 3' -57.9 NC_005264.1 + 160389 1.11 0.001473
Target:  5'- gCCCAGCUCCGGGAAGAACGGGCACACg -3'
miRNA:   3'- -GGGUCGAGGCCCUUCUUGCCCGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 41362 1.11 0.001473
Target:  5'- gCCCAGCUCCGGGAAGAACGGGCACACg -3'
miRNA:   3'- -GGGUCGAGGCCCUUCUUGCCCGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 29409 0.78 0.24133
Target:  5'- gCCAGCUCCGGGAAGAACauGUcCGCg -3'
miRNA:   3'- gGGUCGAGGCCCUUCUUGccCGuGUG- -5'
24761 3' -57.9 NC_005264.1 + 110819 0.75 0.38709
Target:  5'- gCCUAGCgUUCGGGucuGAGCGGGguCGCu -3'
miRNA:   3'- -GGGUCG-AGGCCCuu-CUUGCCCguGUG- -5'
24761 3' -57.9 NC_005264.1 + 68399 0.74 0.420696
Target:  5'- aCUcGCUCUGcGGGAGGACGGGCugcuCGCu -3'
miRNA:   3'- gGGuCGAGGC-CCUUCUUGCCCGu---GUG- -5'
24761 3' -57.9 NC_005264.1 + 152954 0.74 0.429369
Target:  5'- gCCAGggCUGGGAAGGcCGuGGCGCGCc -3'
miRNA:   3'- gGGUCgaGGCCCUUCUuGC-CCGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 60853 0.73 0.483503
Target:  5'- -gCAGCUUCGGcGGAGAucugAUGGGCACGg -3'
miRNA:   3'- ggGUCGAGGCC-CUUCU----UGCCCGUGUg -5'
24761 3' -57.9 NC_005264.1 + 84076 0.72 0.502271
Target:  5'- cCCUGGCUCaUGcGGAGcAGCGGGCGCAUc -3'
miRNA:   3'- -GGGUCGAG-GC-CCUUcUUGCCCGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 27919 0.72 0.530998
Target:  5'- gCCgAGCUCCuGGGGAcGAgcaguucccaACGGGCGcCGCg -3'
miRNA:   3'- -GGgUCGAGG-CCCUU-CU----------UGCCCGU-GUG- -5'
24761 3' -57.9 NC_005264.1 + 64749 0.72 0.550477
Target:  5'- cCCCGGUaaccCCGGGgcGGcCgGGGCACACc -3'
miRNA:   3'- -GGGUCGa---GGCCCuuCUuG-CCCGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 13084 0.72 0.550477
Target:  5'- aCCUugGGCUCCGaGGAuuccGAACGGaGCGCGg -3'
miRNA:   3'- -GGG--UCGAGGC-CCUu---CUUGCC-CGUGUg -5'
24761 3' -57.9 NC_005264.1 + 132111 0.72 0.550477
Target:  5'- aCCUugGGCUCCGaGGAuuccGAACGGaGCGCGg -3'
miRNA:   3'- -GGG--UCGAGGC-CCUu---CUUGCC-CGUGUg -5'
24761 3' -57.9 NC_005264.1 + 2502 0.71 0.580081
Target:  5'- uUCUAGCacacaugCCGGGGAGGuacaGGGUGCGCa -3'
miRNA:   3'- -GGGUCGa------GGCCCUUCUug--CCCGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 33928 0.71 0.590029
Target:  5'- gCCAGg-CUGGGAAGGcCGuGGCGCGCc -3'
miRNA:   3'- gGGUCgaGGCCCUUCUuGC-CCGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 118634 0.7 0.630047
Target:  5'- -aCAGCUCUGGGGAGGGgGGGgGgGa -3'
miRNA:   3'- ggGUCGAGGCCCUUCUUgCCCgUgUg -5'
24761 3' -57.9 NC_005264.1 + 153278 0.7 0.650094
Target:  5'- aCCCGGCUUCuguaGcGAGGcGCGGGCgACGCg -3'
miRNA:   3'- -GGGUCGAGGc---C-CUUCuUGCCCG-UGUG- -5'
24761 3' -57.9 NC_005264.1 + 34251 0.7 0.650094
Target:  5'- aCCCGGCUUCuguaGcGAGGcGCGGGCgACGCg -3'
miRNA:   3'- -GGGUCGAGGc---C-CUUCuUGCCCG-UGUG- -5'
24761 3' -57.9 NC_005264.1 + 25664 0.7 0.650094
Target:  5'- aUCGGCacgUCUGGGGgcagcagaaGGGACGGGaCGCGCa -3'
miRNA:   3'- gGGUCG---AGGCCCU---------UCUUGCCC-GUGUG- -5'
24761 3' -57.9 NC_005264.1 + 128103 0.69 0.670085
Target:  5'- aCCGGCgcgCCGGGAAGAACGccaACGa -3'
miRNA:   3'- gGGUCGa--GGCCCUUCUUGCccgUGUg -5'
24761 3' -57.9 NC_005264.1 + 76694 0.69 0.670085
Target:  5'- gCCCAGCUUgGcGcGGAGCGcGGCGCAa -3'
miRNA:   3'- -GGGUCGAGgCcCuUCUUGC-CCGUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.