miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24762 3' -53.6 NC_005264.1 + 67003 0.66 0.970538
Target:  5'- cGGCGaguGCuGCCUGGAcGGAGc-GGCGg -3'
miRNA:   3'- -CCGCau-UG-CGGGCCUuUCUCuaCCGU- -5'
24762 3' -53.6 NC_005264.1 + 35969 0.67 0.949115
Target:  5'- uGGCGauuCGCCUGGAGGGGGc--GCGg -3'
miRNA:   3'- -CCGCauuGCGGGCCUUUCUCuacCGU- -5'
24762 3' -53.6 NC_005264.1 + 13323 0.67 0.952849
Target:  5'- cGGCG--ACGCCUGGcuaagccGAAGGGAacGGCGc -3'
miRNA:   3'- -CCGCauUGCGGGCC-------UUUCUCUa-CCGU- -5'
24762 3' -53.6 NC_005264.1 + 136951 0.67 0.954842
Target:  5'- aGGCGcAGCGCCCcacugugcGGAGucugcagucuuucuuGGAGgcGGCGu -3'
miRNA:   3'- -CCGCaUUGCGGG--------CCUU---------------UCUCuaCCGU- -5'
24762 3' -53.6 NC_005264.1 + 20534 0.67 0.95601
Target:  5'- cGCGUuGCGCCCGuuGcauggcuuguauguGGGGAUGGUu -3'
miRNA:   3'- cCGCAuUGCGGGCcuU--------------UCUCUACCGu -5'
24762 3' -53.6 NC_005264.1 + 3460 0.67 0.958655
Target:  5'- -cCGUGGCGCCCGGugccgcauccacGAuGUGGCAc -3'
miRNA:   3'- ccGCAUUGCGGGCCuuu---------CUcUACCGU- -5'
24762 3' -53.6 NC_005264.1 + 156586 0.66 0.960833
Target:  5'- cGGCGgcGACGaCCGcGAcGGAGgcGGCAa -3'
miRNA:   3'- -CCGCa-UUGCgGGC-CUuUCUCuaCCGU- -5'
24762 3' -53.6 NC_005264.1 + 119893 0.66 0.967518
Target:  5'- aGGCGUugccGCGCCCGGAcguacgacuGGGuGuacGGCc -3'
miRNA:   3'- -CCGCAu---UGCGGGCCU---------UUCuCua-CCGu -5'
24762 3' -53.6 NC_005264.1 + 35010 0.66 0.967518
Target:  5'- cGGC----CGCCgCGGAGgcaacgcugucgGGAGAUGGCu -3'
miRNA:   3'- -CCGcauuGCGG-GCCUU------------UCUCUACCGu -5'
24762 3' -53.6 NC_005264.1 + 67057 0.68 0.930176
Target:  5'- cGGCGgaaGCGCCUGGAAcGAGuacucGCAc -3'
miRNA:   3'- -CCGCau-UGCGGGCCUUuCUCuac--CGU- -5'
24762 3' -53.6 NC_005264.1 + 26972 0.69 0.887725
Target:  5'- uGGCGUAGauUCCGGGAuuuGAcGUGGCAc -3'
miRNA:   3'- -CCGCAUUgcGGGCCUUu--CUcUACCGU- -5'
24762 3' -53.6 NC_005264.1 + 113966 0.69 0.880717
Target:  5'- cGGaCGUGAagGCaCCGGcGAGAGAUGGa- -3'
miRNA:   3'- -CC-GCAUUg-CG-GGCCuUUCUCUACCgu -5'
24762 3' -53.6 NC_005264.1 + 148512 0.74 0.651383
Target:  5'- uGGCGgcgAGCGCCgCGGAAGaaauuuguGuGAUGGCGu -3'
miRNA:   3'- -CCGCa--UUGCGG-GCCUUU--------CuCUACCGU- -5'
24762 3' -53.6 NC_005264.1 + 146235 0.72 0.733638
Target:  5'- cGGCGUcguGGCGCCCGGAAuacaacuucacuuacGAG-UGGUAc -3'
miRNA:   3'- -CCGCA---UUGCGGGCCUUu--------------CUCuACCGU- -5'
24762 3' -53.6 NC_005264.1 + 161982 0.72 0.742506
Target:  5'- gGGCGcggcAACGCCuCGGAGGGGGAaaGGCc -3'
miRNA:   3'- -CCGCa---UUGCGG-GCCUUUCUCUa-CCGu -5'
24762 3' -53.6 NC_005264.1 + 133302 0.72 0.752265
Target:  5'- gGGCgGUGACGCUgcGAGAGAcGGUGGCGa -3'
miRNA:   3'- -CCG-CAUUGCGGgcCUUUCU-CUACCGU- -5'
24762 3' -53.6 NC_005264.1 + 76192 0.72 0.770502
Target:  5'- gGGUGUcccccgcGGCGCCCaacgcaGAAGAGGUGGCGa -3'
miRNA:   3'- -CCGCA-------UUGCGGGcc----UUUCUCUACCGU- -5'
24762 3' -53.6 NC_005264.1 + 30078 0.71 0.814412
Target:  5'- cGGCGccgccGCGCCCGGAcagaaucgcgagucGAGAuGcgGGCGg -3'
miRNA:   3'- -CCGCau---UGCGGGCCU--------------UUCU-CuaCCGU- -5'
24762 3' -53.6 NC_005264.1 + 124102 0.7 0.863752
Target:  5'- aGGCGgccagccCGUCCGGGGAGGGGUccucuacgccugggGGCGa -3'
miRNA:   3'- -CCGCauu----GCGGGCCUUUCUCUA--------------CCGU- -5'
24762 3' -53.6 NC_005264.1 + 149428 0.69 0.873484
Target:  5'- cGGCGgucGCGCgCCGGugcGGAGAgcugcGGCGg -3'
miRNA:   3'- -CCGCau-UGCG-GGCCuu-UCUCUa----CCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.