miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24762 3' -53.6 NC_005264.1 + 867 0.66 0.967518
Target:  5'- aGGCGUugccGCGCCCGGAcguacgacuGGGuGuacGGCc -3'
miRNA:   3'- -CCGCAu---UGCGGGCCU---------UUCuCua-CCGu -5'
24762 3' -53.6 NC_005264.1 + 2888 0.66 0.970538
Target:  5'- gGGCGcGGCGCggCGGGGAGGGcgacGGCGa -3'
miRNA:   3'- -CCGCaUUGCGg-GCCUUUCUCua--CCGU- -5'
24762 3' -53.6 NC_005264.1 + 3460 0.67 0.958655
Target:  5'- -cCGUGGCGCCCGGugccgcauccacGAuGUGGCAc -3'
miRNA:   3'- ccGCAUUGCGGGCCuuu---------CUcUACCGU- -5'
24762 3' -53.6 NC_005264.1 + 4509 0.66 0.975966
Target:  5'- gGGgGgacugGGCGUCCgcggagGGGGAGGGGUGGUc -3'
miRNA:   3'- -CCgCa----UUGCGGG------CCUUUCUCUACCGu -5'
24762 3' -53.6 NC_005264.1 + 5075 0.7 0.863752
Target:  5'- aGGCGgccagccCGUCCGGGGAGGGGUccucuacgccugggGGCGa -3'
miRNA:   3'- -CCGCauu----GCGGGCCUUUCUCUA--------------CCGU- -5'
24762 3' -53.6 NC_005264.1 + 13323 0.67 0.952849
Target:  5'- cGGCG--ACGCCUGGcuaagccGAAGGGAacGGCGc -3'
miRNA:   3'- -CCGCauUGCGGGCC-------UUUCUCUa-CCGU- -5'
24762 3' -53.6 NC_005264.1 + 20534 0.67 0.95601
Target:  5'- cGCGUuGCGCCCGuuGcauggcuuguauguGGGGAUGGUu -3'
miRNA:   3'- cCGCAuUGCGGGCcuU--------------UCUCUACCGu -5'
24762 3' -53.6 NC_005264.1 + 26972 0.69 0.887725
Target:  5'- uGGCGUAGauUCCGGGAuuuGAcGUGGCAc -3'
miRNA:   3'- -CCGCAUUgcGGGCCUUu--CUcUACCGU- -5'
24762 3' -53.6 NC_005264.1 + 30078 0.71 0.814412
Target:  5'- cGGCGccgccGCGCCCGGAcagaaucgcgagucGAGAuGcgGGCGg -3'
miRNA:   3'- -CCGCau---UGCGGGCCU--------------UUCU-CuaCCGU- -5'
24762 3' -53.6 NC_005264.1 + 30401 0.69 0.873484
Target:  5'- cGGCGgucGCGCgCCGGugcGGAGAgcugcGGCGg -3'
miRNA:   3'- -CCGCau-UGCG-GGCCuu-UCUCUa----CCGU- -5'
24762 3' -53.6 NC_005264.1 + 31477 0.66 0.975966
Target:  5'- gGGCGUGgaugguGCGCCCagucacgaGGAAGGucAGgcGGCu -3'
miRNA:   3'- -CCGCAU------UGCGGG--------CCUUUC--UCuaCCGu -5'
24762 3' -53.6 NC_005264.1 + 35010 0.66 0.967518
Target:  5'- cGGC----CGCCgCGGAGgcaacgcugucgGGAGAUGGCu -3'
miRNA:   3'- -CCGcauuGCGG-GCCUU------------UCUCUACCGu -5'
24762 3' -53.6 NC_005264.1 + 35969 0.67 0.949115
Target:  5'- uGGCGauuCGCCUGGAGGGGGc--GCGg -3'
miRNA:   3'- -CCGCauuGCGGGCCUUUCUCuacCGU- -5'
24762 3' -53.6 NC_005264.1 + 37559 0.66 0.960833
Target:  5'- cGGCGgcGACGaCCGcGAcGGAGgcGGCAa -3'
miRNA:   3'- -CCGCa-UUGCgGGC-CUuUCUCuaCCGU- -5'
24762 3' -53.6 NC_005264.1 + 42165 1.11 0.003937
Target:  5'- uGGCGUAACGCCCGGAAAGAGAUGGCAg -3'
miRNA:   3'- -CCGCAUUGCGGGCCUUUCUCUACCGU- -5'
24762 3' -53.6 NC_005264.1 + 42955 0.72 0.742506
Target:  5'- gGGCGcggcAACGCCuCGGAGGGGGAaaGGCc -3'
miRNA:   3'- -CCGCa---UUGCGG-GCCUUUCUCUa-CCGu -5'
24762 3' -53.6 NC_005264.1 + 67003 0.66 0.970538
Target:  5'- cGGCGaguGCuGCCUGGAcGGAGc-GGCGg -3'
miRNA:   3'- -CCGCau-UG-CGGGCCUuUCUCuaCCGU- -5'
24762 3' -53.6 NC_005264.1 + 67057 0.68 0.930176
Target:  5'- cGGCGgaaGCGCCUGGAAcGAGuacucGCAc -3'
miRNA:   3'- -CCGCau-UGCGGGCCUUuCUCuac--CGU- -5'
24762 3' -53.6 NC_005264.1 + 76192 0.72 0.770502
Target:  5'- gGGUGUcccccgcGGCGCCCaacgcaGAAGAGGUGGCGa -3'
miRNA:   3'- -CCGCA-------UUGCGGGcc----UUUCUCUACCGU- -5'
24762 3' -53.6 NC_005264.1 + 76405 0.66 0.973352
Target:  5'- gGGCGUGgcacauaggGCGCCCGGcgaaAAAGGGAa---- -3'
miRNA:   3'- -CCGCAU---------UGCGGGCC----UUUCUCUaccgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.