miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24762 3' -53.6 NC_005264.1 + 161982 0.72 0.742506
Target:  5'- gGGCGcggcAACGCCuCGGAGGGGGAaaGGCc -3'
miRNA:   3'- -CCGCa---UUGCGG-GCCUUUCUCUa-CCGu -5'
24762 3' -53.6 NC_005264.1 + 161192 1.11 0.003937
Target:  5'- uGGCGUAACGCCCGGAAAGAGAUGGCAg -3'
miRNA:   3'- -CCGCAUUGCGGGCCUUUCUCUACCGU- -5'
24762 3' -53.6 NC_005264.1 + 156586 0.66 0.960833
Target:  5'- cGGCGgcGACGaCCGcGAcGGAGgcGGCAa -3'
miRNA:   3'- -CCGCa-UUGCgGGC-CUuUCUCuaCCGU- -5'
24762 3' -53.6 NC_005264.1 + 152117 0.66 0.973352
Target:  5'- cGGUGUccGCGCCgGGGGacaaguAGAGGUaGGCc -3'
miRNA:   3'- -CCGCAu-UGCGGgCCUU------UCUCUA-CCGu -5'
24762 3' -53.6 NC_005264.1 + 150504 0.66 0.975966
Target:  5'- gGGCGUGgaugguGCGCCCagucacgaGGAAGGucAGgcGGCu -3'
miRNA:   3'- -CCGCAU------UGCGGG--------CCUUUC--UCuaCCGu -5'
24762 3' -53.6 NC_005264.1 + 149428 0.69 0.873484
Target:  5'- cGGCGgucGCGCgCCGGugcGGAGAgcugcGGCGg -3'
miRNA:   3'- -CCGCau-UGCG-GGCCuu-UCUCUa----CCGU- -5'
24762 3' -53.6 NC_005264.1 + 148512 0.74 0.651383
Target:  5'- uGGCGgcgAGCGCCgCGGAAGaaauuuguGuGAUGGCGu -3'
miRNA:   3'- -CCGCa--UUGCGG-GCCUUU--------CuCUACCGU- -5'
24762 3' -53.6 NC_005264.1 + 146235 0.72 0.733638
Target:  5'- cGGCGUcguGGCGCCCGGAAuacaacuucacuuacGAG-UGGUAc -3'
miRNA:   3'- -CCGCA---UUGCGGGCCUUu--------------CUCuACCGU- -5'
24762 3' -53.6 NC_005264.1 + 144303 0.67 0.953252
Target:  5'- cGcCGgcGCGCCCucaGggGGAGAcGGCGc -3'
miRNA:   3'- cC-GCauUGCGGGc--CuuUCUCUaCCGU- -5'
24762 3' -53.6 NC_005264.1 + 136951 0.67 0.954842
Target:  5'- aGGCGcAGCGCCCcacugugcGGAGucugcagucuuucuuGGAGgcGGCGu -3'
miRNA:   3'- -CCGCaUUGCGGG--------CCUU---------------UCUCuaCCGU- -5'
24762 3' -53.6 NC_005264.1 + 133302 0.72 0.752265
Target:  5'- gGGCgGUGACGCUgcGAGAGAcGGUGGCGa -3'
miRNA:   3'- -CCG-CAUUGCGGgcCUUUCU-CUACCGU- -5'
24762 3' -53.6 NC_005264.1 + 131614 0.66 0.964285
Target:  5'- cGCGUGggcGCGCgCGGAGaAGAacaGAUGGUc -3'
miRNA:   3'- cCGCAU---UGCGgGCCUU-UCU---CUACCGu -5'
24762 3' -53.6 NC_005264.1 + 126637 0.66 0.970538
Target:  5'- cGCGUcgAGCaCCuCGGggGGGGAUGaGCc -3'
miRNA:   3'- cCGCA--UUGcGG-GCCuuUCUCUAC-CGu -5'
24762 3' -53.6 NC_005264.1 + 124102 0.7 0.863752
Target:  5'- aGGCGgccagccCGUCCGGGGAGGGGUccucuacgccugggGGCGa -3'
miRNA:   3'- -CCGCauu----GCGGGCCUUUCUCUA--------------CCGU- -5'
24762 3' -53.6 NC_005264.1 + 123536 0.66 0.975966
Target:  5'- gGGgGgacugGGCGUCCgcggagGGGGAGGGGUGGUc -3'
miRNA:   3'- -CCgCa----UUGCGGG------CCUUUCUCUACCGu -5'
24762 3' -53.6 NC_005264.1 + 121914 0.66 0.970538
Target:  5'- gGGCGcGGCGCggCGGGGAGGGcgacGGCGa -3'
miRNA:   3'- -CCGCaUUGCGg-GCCUUUCUCua--CCGU- -5'
24762 3' -53.6 NC_005264.1 + 119893 0.66 0.967518
Target:  5'- aGGCGUugccGCGCCCGGAcguacgacuGGGuGuacGGCc -3'
miRNA:   3'- -CCGCAu---UGCGGGCCU---------UUCuCua-CCGu -5'
24762 3' -53.6 NC_005264.1 + 114189 0.71 0.825676
Target:  5'- cGgGUAACGUCgCGGAucuGGAUGGCAc -3'
miRNA:   3'- cCgCAUUGCGG-GCCUuucUCUACCGU- -5'
24762 3' -53.6 NC_005264.1 + 113966 0.69 0.880717
Target:  5'- cGGaCGUGAagGCaCCGGcGAGAGAUGGa- -3'
miRNA:   3'- -CC-GCAUUg-CG-GGCCuUUCUCUACCgu -5'
24762 3' -53.6 NC_005264.1 + 102799 0.69 0.901049
Target:  5'- uGCGcGAUGCCCGcGAuGAGAGG-GGCGu -3'
miRNA:   3'- cCGCaUUGCGGGC-CU-UUCUCUaCCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.