miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24762 5' -62.6 NC_005264.1 + 78659 0.66 0.627362
Target:  5'- uGUGCCUcgucccacuauguGCCGGCGUCuCCGUAgugaUCgCg -3'
miRNA:   3'- gCGCGGG-------------UGGCCGCAG-GGCAU----AGgGa -5'
24762 5' -62.6 NC_005264.1 + 119455 0.68 0.53273
Target:  5'- uCGCGCCCcucuGCCcuaGCGUCUCGUA-CCUa -3'
miRNA:   3'- -GCGCGGG----UGGc--CGCAGGGCAUaGGGa -5'
24762 5' -62.6 NC_005264.1 + 116650 0.68 0.551543
Target:  5'- aGCgGUCCGCCGGCGUgCUCGgcgAUCagCCUa -3'
miRNA:   3'- gCG-CGGGUGGCCGCA-GGGCa--UAG--GGA- -5'
24762 5' -62.6 NC_005264.1 + 134907 0.68 0.561026
Target:  5'- gGCGCCCGuuGGCGaaCUGcucGUCCCc -3'
miRNA:   3'- gCGCGGGUggCCGCagGGCa--UAGGGa -5'
24762 5' -62.6 NC_005264.1 + 59710 0.68 0.561026
Target:  5'- gCGCGCCgCGCCGGCGgcuaCCGcg-CCg- -3'
miRNA:   3'- -GCGCGG-GUGGCCGCag--GGCauaGGga -5'
24762 5' -62.6 NC_005264.1 + 64681 0.67 0.589718
Target:  5'- uGgGCCUGCCGGCGggcaggCCGUGcucgCCCg -3'
miRNA:   3'- gCgCGGGUGGCCGCag----GGCAUa---GGGa -5'
24762 5' -62.6 NC_005264.1 + 101962 0.67 0.589718
Target:  5'- cCGC-CUgGCCGGUGucaUCCCGUggCCCa -3'
miRNA:   3'- -GCGcGGgUGGCCGC---AGGGCAuaGGGa -5'
24762 5' -62.6 NC_005264.1 + 154620 0.67 0.608993
Target:  5'- uGCGgCUucgGCCGauggccGCGUCuCCGUGUCCCc -3'
miRNA:   3'- gCGCgGG---UGGC------CGCAG-GGCAUAGGGa -5'
24762 5' -62.6 NC_005264.1 + 79735 0.67 0.608993
Target:  5'- gGCGCCCGUCGGCGUacaCCUGcgcuacguUGUUCCg -3'
miRNA:   3'- gCGCGGGUGGCCGCA---GGGC--------AUAGGGa -5'
24762 5' -62.6 NC_005264.1 + 126093 0.68 0.53273
Target:  5'- gGCGCCgGCCGGCG--CCGUcgCgCUg -3'
miRNA:   3'- gCGCGGgUGGCCGCagGGCAuaGgGA- -5'
24762 5' -62.6 NC_005264.1 + 154555 0.69 0.504963
Target:  5'- cCGuCGCCCACgGGCGcCuuGUuggcGUUCCUg -3'
miRNA:   3'- -GC-GCGGGUGgCCGCaGggCA----UAGGGA- -5'
24762 5' -62.6 NC_005264.1 + 127047 0.69 0.504963
Target:  5'- gGCGCCCGCCacgacGGCGcCaCCGcg-CCCUc -3'
miRNA:   3'- gCGCGGGUGG-----CCGCaG-GGCauaGGGA- -5'
24762 5' -62.6 NC_005264.1 + 61265 0.77 0.167944
Target:  5'- gCGCGCCU--CGGCGUaCCCGUAUUCCa -3'
miRNA:   3'- -GCGCGGGugGCCGCA-GGGCAUAGGGa -5'
24762 5' -62.6 NC_005264.1 + 67387 0.76 0.184743
Target:  5'- uGCGCCCGCCGGCGcgguagCGUAUUCCa -3'
miRNA:   3'- gCGCGGGUGGCCGCagg---GCAUAGGGa -5'
24762 5' -62.6 NC_005264.1 + 161679 0.7 0.401191
Target:  5'- uCGCGCgCCggcagacuggcgGCCGGauCGUCCCGUGcgCCCg -3'
miRNA:   3'- -GCGCG-GG------------UGGCC--GCAGGGCAUa-GGGa -5'
24762 5' -62.6 NC_005264.1 + 131382 0.7 0.409319
Target:  5'- -aCGCCCAUCGGCGacgcUCUCGUcggagggcgGUCCCg -3'
miRNA:   3'- gcGCGGGUGGCCGC----AGGGCA---------UAGGGa -5'
24762 5' -62.6 NC_005264.1 + 127344 0.7 0.434307
Target:  5'- uGCGCCg--CGGCGUCgCCGUcGUCCCc -3'
miRNA:   3'- gCGCGGgugGCCGCAG-GGCA-UAGGGa -5'
24762 5' -62.6 NC_005264.1 + 155782 0.69 0.460158
Target:  5'- gGCGCCgGCCGGCG--CCGUcgCCgCUu -3'
miRNA:   3'- gCGCGGgUGGCCGCagGGCAuaGG-GA- -5'
24762 5' -62.6 NC_005264.1 + 149223 0.69 0.483205
Target:  5'- cCGcCGCCCcuGCCcGCGUCCCGaccgcgaucgccgGUCCCg -3'
miRNA:   3'- -GC-GCGGG--UGGcCGCAGGGCa------------UAGGGa -5'
24762 5' -62.6 NC_005264.1 + 99801 0.69 0.504963
Target:  5'- aCGCGCCC-CUGGCGUagaGUAuuUCCCc -3'
miRNA:   3'- -GCGCGGGuGGCCGCAgggCAU--AGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.