miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24762 5' -62.6 NC_005264.1 + 428 0.68 0.53273
Target:  5'- uCGCGCCCcucuGCCcuaGCGUCUCGUA-CCUa -3'
miRNA:   3'- -GCGCGGG----UGGc--CGCAGGGCAUaGGGa -5'
24762 5' -62.6 NC_005264.1 + 4732 0.66 0.666979
Target:  5'- cCGCuGCCCgccgaGCCGGCGUCCgGggguggaCCg -3'
miRNA:   3'- -GCG-CGGG-----UGGCCGCAGGgCauag---GGa -5'
24762 5' -62.6 NC_005264.1 + 7066 0.68 0.53273
Target:  5'- gGCGCCgGCCGGCG--CCGUcgCgCUg -3'
miRNA:   3'- gCGCGGgUGGCCGCagGGCAuaGgGA- -5'
24762 5' -62.6 NC_005264.1 + 8020 0.69 0.504963
Target:  5'- gGCGCCCGCCacgacGGCGcCaCCGcg-CCCUc -3'
miRNA:   3'- gCGCGGGUGG-----CCGCaG-GGCauaGGGA- -5'
24762 5' -62.6 NC_005264.1 + 8317 0.7 0.434307
Target:  5'- uGCGCCg--CGGCGUCgCCGUcGUCCCc -3'
miRNA:   3'- gCGCGGgugGCCGCAG-GGCA-UAGGGa -5'
24762 5' -62.6 NC_005264.1 + 12355 0.7 0.409319
Target:  5'- -aCGCCCAUCGGCGacgcUCUCGUcggagggcgGUCCCg -3'
miRNA:   3'- gcGCGGGUGGCCGC----AGGGCA---------UAGGGa -5'
24762 5' -62.6 NC_005264.1 + 20151 0.69 0.460158
Target:  5'- gGCGCgCCGCCGGCG-CCCaagAUCgCg -3'
miRNA:   3'- gCGCG-GGUGGCCGCaGGGca-UAGgGa -5'
24762 5' -62.6 NC_005264.1 + 24974 0.66 0.62833
Target:  5'- cCGCGagaCCugCGGuUGUCCCcGUAccCCCUg -3'
miRNA:   3'- -GCGCg--GGugGCC-GCAGGG-CAUa-GGGA- -5'
24762 5' -62.6 NC_005264.1 + 28521 0.67 0.589718
Target:  5'- uGCGaCCUACUGaGcCGUCCUGUGUCUg- -3'
miRNA:   3'- gCGC-GGGUGGC-C-GCAGGGCAUAGGga -5'
24762 5' -62.6 NC_005264.1 + 30196 0.69 0.483205
Target:  5'- cCGcCGCCCcuGCCcGCGUCCCGaccgcgaucgccgGUCCCg -3'
miRNA:   3'- -GC-GCGGG--UGGcCGCAGGGCa------------UAGGGa -5'
24762 5' -62.6 NC_005264.1 + 35528 0.69 0.504963
Target:  5'- cCGuCGCCCACgGGCGcCuuGUuggcGUUCCUg -3'
miRNA:   3'- -GC-GCGGGUGgCCGCaGggCA----UAGGGA- -5'
24762 5' -62.6 NC_005264.1 + 35593 0.67 0.608993
Target:  5'- uGCGgCUucgGCCGauggccGCGUCuCCGUGUCCCc -3'
miRNA:   3'- gCGCgGG---UGGC------CGCAG-GGCAUAGGGa -5'
24762 5' -62.6 NC_005264.1 + 36756 0.69 0.460158
Target:  5'- gGCGCCgGCCGGCG--CCGUcgCCgCUu -3'
miRNA:   3'- gCGCGGgUGGCCGCagGGCAuaGG-GA- -5'
24762 5' -62.6 NC_005264.1 + 42200 1.07 0.001147
Target:  5'- cCGCGCCCACCGGCGUCCCGUAUCCCUg -3'
miRNA:   3'- -GCGCGGGUGGCCGCAGGGCAUAGGGA- -5'
24762 5' -62.6 NC_005264.1 + 42653 0.7 0.401191
Target:  5'- uCGCGCgCCggcagacuggcgGCCGGauCGUCCCGUGcgCCCg -3'
miRNA:   3'- -GCGCG-GG------------UGGCC--GCAGGGCAUa-GGGa -5'
24762 5' -62.6 NC_005264.1 + 42701 0.66 0.666979
Target:  5'- -uCGCCgGCCGGCGcUCCGUccUCCUg -3'
miRNA:   3'- gcGCGGgUGGCCGCaGGGCAuaGGGA- -5'
24762 5' -62.6 NC_005264.1 + 50213 0.68 0.561026
Target:  5'- aCGCGUCUgcguugcgugACCGGCGggcCCCGc-UCCCa -3'
miRNA:   3'- -GCGCGGG----------UGGCCGCa--GGGCauAGGGa -5'
24762 5' -62.6 NC_005264.1 + 51844 0.66 0.647677
Target:  5'- gGCGCuCCGCgGGCGUCaCCGa--CUCUu -3'
miRNA:   3'- gCGCG-GGUGgCCGCAG-GGCauaGGGA- -5'
24762 5' -62.6 NC_005264.1 + 55641 0.68 0.52341
Target:  5'- gCGCGCgCCGCCgccuuuaguuuuGGCGgccCCgGUAUCCUg -3'
miRNA:   3'- -GCGCG-GGUGG------------CCGCa--GGgCAUAGGGa -5'
24762 5' -62.6 NC_005264.1 + 59710 0.68 0.561026
Target:  5'- gCGCGCCgCGCCGGCGgcuaCCGcg-CCg- -3'
miRNA:   3'- -GCGCGG-GUGGCCGCag--GGCauaGGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.