Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24762 | 5' | -62.6 | NC_005264.1 | + | 161679 | 0.7 | 0.401191 |
Target: 5'- uCGCGCgCCggcagacuggcgGCCGGauCGUCCCGUGcgCCCg -3' miRNA: 3'- -GCGCG-GG------------UGGCC--GCAGGGCAUa-GGGa -5' |
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24762 | 5' | -62.6 | NC_005264.1 | + | 161227 | 1.07 | 0.001147 |
Target: 5'- cCGCGCCCACCGGCGUCCCGUAUCCCUg -3' miRNA: 3'- -GCGCGGGUGGCCGCAGGGCAUAGGGA- -5' |
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24762 | 5' | -62.6 | NC_005264.1 | + | 155782 | 0.69 | 0.460158 |
Target: 5'- gGCGCCgGCCGGCG--CCGUcgCCgCUu -3' miRNA: 3'- gCGCGGgUGGCCGCagGGCAuaGG-GA- -5' |
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24762 | 5' | -62.6 | NC_005264.1 | + | 154620 | 0.67 | 0.608993 |
Target: 5'- uGCGgCUucgGCCGauggccGCGUCuCCGUGUCCCc -3' miRNA: 3'- gCGCgGG---UGGC------CGCAG-GGCAUAGGGa -5' |
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24762 | 5' | -62.6 | NC_005264.1 | + | 154555 | 0.69 | 0.504963 |
Target: 5'- cCGuCGCCCACgGGCGcCuuGUuggcGUUCCUg -3' miRNA: 3'- -GC-GCGGGUGgCCGCaGggCA----UAGGGA- -5' |
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24762 | 5' | -62.6 | NC_005264.1 | + | 149223 | 0.69 | 0.483205 |
Target: 5'- cCGcCGCCCcuGCCcGCGUCCCGaccgcgaucgccgGUCCCg -3' miRNA: 3'- -GC-GCGGG--UGGcCGCAGGGCa------------UAGGGa -5' |
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24762 | 5' | -62.6 | NC_005264.1 | + | 143743 | 0.69 | 0.495844 |
Target: 5'- cCGCGCCgcCGCgGuGCaGUCCUGgcUCCCUa -3' miRNA: 3'- -GCGCGG--GUGgC-CG-CAGGGCauAGGGA- -5' |
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24762 | 5' | -62.6 | NC_005264.1 | + | 143412 | 0.67 | 0.608993 |
Target: 5'- cCGCGCCCcgcggccacacCCGGCGcCUCGccUCCCc -3' miRNA: 3'- -GCGCGGGu----------GGCCGCaGGGCauAGGGa -5' |
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24762 | 5' | -62.6 | NC_005264.1 | + | 134907 | 0.68 | 0.561026 |
Target: 5'- gGCGCCCGuuGGCGaaCUGcucGUCCCc -3' miRNA: 3'- gCGCGGGUggCCGCagGGCa--UAGGGa -5' |
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24762 | 5' | -62.6 | NC_005264.1 | + | 131382 | 0.7 | 0.409319 |
Target: 5'- -aCGCCCAUCGGCGacgcUCUCGUcggagggcgGUCCCg -3' miRNA: 3'- gcGCGGGUGGCCGC----AGGGCA---------UAGGGa -5' |
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24762 | 5' | -62.6 | NC_005264.1 | + | 127344 | 0.7 | 0.434307 |
Target: 5'- uGCGCCg--CGGCGUCgCCGUcGUCCCc -3' miRNA: 3'- gCGCGGgugGCCGCAG-GGCA-UAGGGa -5' |
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24762 | 5' | -62.6 | NC_005264.1 | + | 127047 | 0.69 | 0.504963 |
Target: 5'- gGCGCCCGCCacgacGGCGcCaCCGcg-CCCUc -3' miRNA: 3'- gCGCGGGUGG-----CCGCaG-GGCauaGGGA- -5' |
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24762 | 5' | -62.6 | NC_005264.1 | + | 126093 | 0.68 | 0.53273 |
Target: 5'- gGCGCCgGCCGGCG--CCGUcgCgCUg -3' miRNA: 3'- gCGCGGgUGGCCGCagGGCAuaGgGA- -5' |
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24762 | 5' | -62.6 | NC_005264.1 | + | 123758 | 0.66 | 0.666979 |
Target: 5'- cCGCuGCCCgccgaGCCGGCGUCCgGggguggaCCg -3' miRNA: 3'- -GCG-CGGG-----UGGCCGCAGGgCauag---GGa -5' |
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24762 | 5' | -62.6 | NC_005264.1 | + | 119455 | 0.68 | 0.53273 |
Target: 5'- uCGCGCCCcucuGCCcuaGCGUCUCGUA-CCUa -3' miRNA: 3'- -GCGCGGG----UGGc--CGCAGGGCAUaGGGa -5' |
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24762 | 5' | -62.6 | NC_005264.1 | + | 118690 | 0.66 | 0.654441 |
Target: 5'- aCGCGCUCGCgCGGCuuaccugcccUCCCGcucguaaucgccgcUAUCCCg -3' miRNA: 3'- -GCGCGGGUG-GCCGc---------AGGGC--------------AUAGGGa -5' |
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24762 | 5' | -62.6 | NC_005264.1 | + | 116650 | 0.68 | 0.551543 |
Target: 5'- aGCgGUCCGCCGGCGUgCUCGgcgAUCagCCUa -3' miRNA: 3'- gCG-CGGGUGGCCGCA-GGGCa--UAG--GGA- -5' |
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24762 | 5' | -62.6 | NC_005264.1 | + | 113240 | 0.67 | 0.570553 |
Target: 5'- aGCGCCCcCCGuCGUCCUG-GUCgCCg -3' miRNA: 3'- gCGCGGGuGGCcGCAGGGCaUAG-GGa -5' |
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24762 | 5' | -62.6 | NC_005264.1 | + | 108615 | 0.67 | 0.589718 |
Target: 5'- aGCGUgaaCgCACCGGCcgccgUCCGUAUCCCc -3' miRNA: 3'- gCGCG---G-GUGGCCGca---GGGCAUAGGGa -5' |
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24762 | 5' | -62.6 | NC_005264.1 | + | 101962 | 0.67 | 0.589718 |
Target: 5'- cCGC-CUgGCCGGUGucaUCCCGUggCCCa -3' miRNA: 3'- -GCGcGGgUGGCCGC---AGGGCAuaGGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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