miRNA display CGI


Results 21 - 40 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24762 5' -62.6 NC_005264.1 + 61265 0.77 0.167944
Target:  5'- gCGCGCCU--CGGCGUaCCCGUAUUCCa -3'
miRNA:   3'- -GCGCGGGugGCCGCA-GGGCAUAGGGa -5'
24762 5' -62.6 NC_005264.1 + 64681 0.67 0.589718
Target:  5'- uGgGCCUGCCGGCGggcaggCCGUGcucgCCCg -3'
miRNA:   3'- gCgCGGGUGGCCGCag----GGCAUa---GGGa -5'
24762 5' -62.6 NC_005264.1 + 67387 0.76 0.184743
Target:  5'- uGCGCCCGCCGGCGcgguagCGUAUUCCa -3'
miRNA:   3'- gCGCGGGUGGCCGCagg---GCAUAGGGa -5'
24762 5' -62.6 NC_005264.1 + 78659 0.66 0.627362
Target:  5'- uGUGCCUcgucccacuauguGCCGGCGUCuCCGUAgugaUCgCg -3'
miRNA:   3'- gCGCGGG-------------UGGCCGCAG-GGCAU----AGgGa -5'
24762 5' -62.6 NC_005264.1 + 79735 0.67 0.608993
Target:  5'- gGCGCCCGUCGGCGUacaCCUGcgcuacguUGUUCCg -3'
miRNA:   3'- gCGCGGGUGGCCGCA---GGGC--------AUAGGGa -5'
24762 5' -62.6 NC_005264.1 + 85448 0.69 0.495844
Target:  5'- aGCGCUUGCCGGCGUCUgGg--CCg- -3'
miRNA:   3'- gCGCGGGUGGCCGCAGGgCauaGGga -5'
24762 5' -62.6 NC_005264.1 + 91415 0.68 0.54211
Target:  5'- aGCGCCggggCACCGGCGgagUCUGUGUCa-- -3'
miRNA:   3'- gCGCGG----GUGGCCGCa--GGGCAUAGgga -5'
24762 5' -62.6 NC_005264.1 + 96154 0.66 0.638005
Target:  5'- aCGCccCCCGcCCGGCG-CCgGUAguUCCCUu -3'
miRNA:   3'- -GCGc-GGGU-GGCCGCaGGgCAU--AGGGA- -5'
24762 5' -62.6 NC_005264.1 + 99801 0.69 0.504963
Target:  5'- aCGCGCCC-CUGGCGUagaGUAuuUCCCc -3'
miRNA:   3'- -GCGCGGGuGGCCGCAgggCAU--AGGGa -5'
24762 5' -62.6 NC_005264.1 + 101962 0.67 0.589718
Target:  5'- cCGC-CUgGCCGGUGucaUCCCGUggCCCa -3'
miRNA:   3'- -GCGcGGgUGGCCGC---AGGGCAuaGGGa -5'
24762 5' -62.6 NC_005264.1 + 108615 0.67 0.589718
Target:  5'- aGCGUgaaCgCACCGGCcgccgUCCGUAUCCCc -3'
miRNA:   3'- gCGCG---G-GUGGCCGca---GGGCAUAGGGa -5'
24762 5' -62.6 NC_005264.1 + 113240 0.67 0.570553
Target:  5'- aGCGCCCcCCGuCGUCCUG-GUCgCCg -3'
miRNA:   3'- gCGCGGGuGGCcGCAGGGCaUAG-GGa -5'
24762 5' -62.6 NC_005264.1 + 116650 0.68 0.551543
Target:  5'- aGCgGUCCGCCGGCGUgCUCGgcgAUCagCCUa -3'
miRNA:   3'- gCG-CGGGUGGCCGCA-GGGCa--UAG--GGA- -5'
24762 5' -62.6 NC_005264.1 + 118690 0.66 0.654441
Target:  5'- aCGCGCUCGCgCGGCuuaccugcccUCCCGcucguaaucgccgcUAUCCCg -3'
miRNA:   3'- -GCGCGGGUG-GCCGc---------AGGGC--------------AUAGGGa -5'
24762 5' -62.6 NC_005264.1 + 119455 0.68 0.53273
Target:  5'- uCGCGCCCcucuGCCcuaGCGUCUCGUA-CCUa -3'
miRNA:   3'- -GCGCGGG----UGGc--CGCAGGGCAUaGGGa -5'
24762 5' -62.6 NC_005264.1 + 123758 0.66 0.666979
Target:  5'- cCGCuGCCCgccgaGCCGGCGUCCgGggguggaCCg -3'
miRNA:   3'- -GCG-CGGG-----UGGCCGCAGGgCauag---GGa -5'
24762 5' -62.6 NC_005264.1 + 126093 0.68 0.53273
Target:  5'- gGCGCCgGCCGGCG--CCGUcgCgCUg -3'
miRNA:   3'- gCGCGGgUGGCCGCagGGCAuaGgGA- -5'
24762 5' -62.6 NC_005264.1 + 127047 0.69 0.504963
Target:  5'- gGCGCCCGCCacgacGGCGcCaCCGcg-CCCUc -3'
miRNA:   3'- gCGCGGGUGG-----CCGCaG-GGCauaGGGA- -5'
24762 5' -62.6 NC_005264.1 + 127344 0.7 0.434307
Target:  5'- uGCGCCg--CGGCGUCgCCGUcGUCCCc -3'
miRNA:   3'- gCGCGGgugGCCGCAG-GGCA-UAGGGa -5'
24762 5' -62.6 NC_005264.1 + 131382 0.7 0.409319
Target:  5'- -aCGCCCAUCGGCGacgcUCUCGUcggagggcgGUCCCg -3'
miRNA:   3'- gcGCGGGUGGCCGC----AGGGCA---------UAGGGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.