miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24762 5' -62.6 NC_005264.1 + 8020 0.69 0.504963
Target:  5'- gGCGCCCGCCacgacGGCGcCaCCGcg-CCCUc -3'
miRNA:   3'- gCGCGGGUGG-----CCGCaG-GGCauaGGGA- -5'
24762 5' -62.6 NC_005264.1 + 154555 0.69 0.504963
Target:  5'- cCGuCGCCCACgGGCGcCuuGUuggcGUUCCUg -3'
miRNA:   3'- -GC-GCGGGUGgCCGCaGggCA----UAGGGA- -5'
24762 5' -62.6 NC_005264.1 + 55641 0.68 0.52341
Target:  5'- gCGCGCgCCGCCgccuuuaguuuuGGCGgccCCgGUAUCCUg -3'
miRNA:   3'- -GCGCG-GGUGG------------CCGCa--GGgCAUAGGGa -5'
24762 5' -62.6 NC_005264.1 + 126093 0.68 0.53273
Target:  5'- gGCGCCgGCCGGCG--CCGUcgCgCUg -3'
miRNA:   3'- gCGCGGgUGGCCGCagGGCAuaGgGA- -5'
24762 5' -62.6 NC_005264.1 + 119455 0.68 0.53273
Target:  5'- uCGCGCCCcucuGCCcuaGCGUCUCGUA-CCUa -3'
miRNA:   3'- -GCGCGGG----UGGc--CGCAGGGCAUaGGGa -5'
24762 5' -62.6 NC_005264.1 + 7066 0.68 0.53273
Target:  5'- gGCGCCgGCCGGCG--CCGUcgCgCUg -3'
miRNA:   3'- gCGCGGgUGGCCGCagGGCAuaGgGA- -5'
24762 5' -62.6 NC_005264.1 + 428 0.68 0.53273
Target:  5'- uCGCGCCCcucuGCCcuaGCGUCUCGUA-CCUa -3'
miRNA:   3'- -GCGCGGG----UGGc--CGCAGGGCAUaGGGa -5'
24762 5' -62.6 NC_005264.1 + 91415 0.68 0.54211
Target:  5'- aGCGCCggggCACCGGCGgagUCUGUGUCa-- -3'
miRNA:   3'- gCGCGG----GUGGCCGCa--GGGCAUAGgga -5'
24762 5' -62.6 NC_005264.1 + 116650 0.68 0.551543
Target:  5'- aGCgGUCCGCCGGCGUgCUCGgcgAUCagCCUa -3'
miRNA:   3'- gCG-CGGGUGGCCGCA-GGGCa--UAG--GGA- -5'
24762 5' -62.6 NC_005264.1 + 50213 0.68 0.561026
Target:  5'- aCGCGUCUgcguugcgugACCGGCGggcCCCGc-UCCCa -3'
miRNA:   3'- -GCGCGGG----------UGGCCGCa--GGGCauAGGGa -5'
24762 5' -62.6 NC_005264.1 + 59710 0.68 0.561026
Target:  5'- gCGCGCCgCGCCGGCGgcuaCCGcg-CCg- -3'
miRNA:   3'- -GCGCGG-GUGGCCGCag--GGCauaGGga -5'
24762 5' -62.6 NC_005264.1 + 134907 0.68 0.561026
Target:  5'- gGCGCCCGuuGGCGaaCUGcucGUCCCc -3'
miRNA:   3'- gCGCGGGUggCCGCagGGCa--UAGGGa -5'
24762 5' -62.6 NC_005264.1 + 113240 0.67 0.570553
Target:  5'- aGCGCCCcCCGuCGUCCUG-GUCgCCg -3'
miRNA:   3'- gCGCGGGuGGCcGCAGGGCaUAG-GGa -5'
24762 5' -62.6 NC_005264.1 + 64681 0.67 0.589718
Target:  5'- uGgGCCUGCCGGCGggcaggCCGUGcucgCCCg -3'
miRNA:   3'- gCgCGGGUGGCCGCag----GGCAUa---GGGa -5'
24762 5' -62.6 NC_005264.1 + 101962 0.67 0.589718
Target:  5'- cCGC-CUgGCCGGUGucaUCCCGUggCCCa -3'
miRNA:   3'- -GCGcGGgUGGCCGC---AGGGCAuaGGGa -5'
24762 5' -62.6 NC_005264.1 + 28521 0.67 0.589718
Target:  5'- uGCGaCCUACUGaGcCGUCCUGUGUCUg- -3'
miRNA:   3'- gCGC-GGGUGGC-C-GCAGGGCAUAGGga -5'
24762 5' -62.6 NC_005264.1 + 108615 0.67 0.589718
Target:  5'- aGCGUgaaCgCACCGGCcgccgUCCGUAUCCCc -3'
miRNA:   3'- gCGCG---G-GUGGCCGca---GGGCAUAGGGa -5'
24762 5' -62.6 NC_005264.1 + 79735 0.67 0.608993
Target:  5'- gGCGCCCGUCGGCGUacaCCUGcgcuacguUGUUCCg -3'
miRNA:   3'- gCGCGGGUGGCCGCA---GGGC--------AUAGGGa -5'
24762 5' -62.6 NC_005264.1 + 154620 0.67 0.608993
Target:  5'- uGCGgCUucgGCCGauggccGCGUCuCCGUGUCCCc -3'
miRNA:   3'- gCGCgGG---UGGC------CGCAG-GGCAUAGGGa -5'
24762 5' -62.6 NC_005264.1 + 143412 0.67 0.608993
Target:  5'- cCGCGCCCcgcggccacacCCGGCGcCUCGccUCCCc -3'
miRNA:   3'- -GCGCGGGu----------GGCCGCaGGGCauAGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.