miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24762 5' -62.6 NC_005264.1 + 116650 0.68 0.551543
Target:  5'- aGCgGUCCGCCGGCGUgCUCGgcgAUCagCCUa -3'
miRNA:   3'- gCG-CGGGUGGCCGCA-GGGCa--UAG--GGA- -5'
24762 5' -62.6 NC_005264.1 + 91415 0.68 0.54211
Target:  5'- aGCGCCggggCACCGGCGgagUCUGUGUCa-- -3'
miRNA:   3'- gCGCGG----GUGGCCGCa--GGGCAUAGgga -5'
24762 5' -62.6 NC_005264.1 + 7066 0.68 0.53273
Target:  5'- gGCGCCgGCCGGCG--CCGUcgCgCUg -3'
miRNA:   3'- gCGCGGgUGGCCGCagGGCAuaGgGA- -5'
24762 5' -62.6 NC_005264.1 + 428 0.68 0.53273
Target:  5'- uCGCGCCCcucuGCCcuaGCGUCUCGUA-CCUa -3'
miRNA:   3'- -GCGCGGG----UGGc--CGCAGGGCAUaGGGa -5'
24762 5' -62.6 NC_005264.1 + 119455 0.68 0.53273
Target:  5'- uCGCGCCCcucuGCCcuaGCGUCUCGUA-CCUa -3'
miRNA:   3'- -GCGCGGG----UGGc--CGCAGGGCAUaGGGa -5'
24762 5' -62.6 NC_005264.1 + 126093 0.68 0.53273
Target:  5'- gGCGCCgGCCGGCG--CCGUcgCgCUg -3'
miRNA:   3'- gCGCGGgUGGCCGCagGGCAuaGgGA- -5'
24762 5' -62.6 NC_005264.1 + 55641 0.68 0.52341
Target:  5'- gCGCGCgCCGCCgccuuuaguuuuGGCGgccCCgGUAUCCUg -3'
miRNA:   3'- -GCGCG-GGUGG------------CCGCa--GGgCAUAGGGa -5'
24762 5' -62.6 NC_005264.1 + 154555 0.69 0.504963
Target:  5'- cCGuCGCCCACgGGCGcCuuGUuggcGUUCCUg -3'
miRNA:   3'- -GC-GCGGGUGgCCGCaGggCA----UAGGGA- -5'
24762 5' -62.6 NC_005264.1 + 35528 0.69 0.504963
Target:  5'- cCGuCGCCCACgGGCGcCuuGUuggcGUUCCUg -3'
miRNA:   3'- -GC-GCGGGUGgCCGCaGggCA----UAGGGA- -5'
24762 5' -62.6 NC_005264.1 + 99801 0.69 0.504963
Target:  5'- aCGCGCCC-CUGGCGUagaGUAuuUCCCc -3'
miRNA:   3'- -GCGCGGGuGGCCGCAgggCAU--AGGGa -5'
24762 5' -62.6 NC_005264.1 + 127047 0.69 0.504963
Target:  5'- gGCGCCCGCCacgacGGCGcCaCCGcg-CCCUc -3'
miRNA:   3'- gCGCGGGUGG-----CCGCaG-GGCauaGGGA- -5'
24762 5' -62.6 NC_005264.1 + 8020 0.69 0.504963
Target:  5'- gGCGCCCGCCacgacGGCGcCaCCGcg-CCCUc -3'
miRNA:   3'- gCGCGGGUGG-----CCGCaG-GGCauaGGGA- -5'
24762 5' -62.6 NC_005264.1 + 85448 0.69 0.495844
Target:  5'- aGCGCUUGCCGGCGUCUgGg--CCg- -3'
miRNA:   3'- gCGCGGGUGGCCGCAGGgCauaGGga -5'
24762 5' -62.6 NC_005264.1 + 143743 0.69 0.495844
Target:  5'- cCGCGCCgcCGCgGuGCaGUCCUGgcUCCCUa -3'
miRNA:   3'- -GCGCGG--GUGgC-CG-CAGGGCauAGGGA- -5'
24762 5' -62.6 NC_005264.1 + 30196 0.69 0.483205
Target:  5'- cCGcCGCCCcuGCCcGCGUCCCGaccgcgaucgccgGUCCCg -3'
miRNA:   3'- -GC-GCGGG--UGGcCGCAGGGCa------------UAGGGa -5'
24762 5' -62.6 NC_005264.1 + 149223 0.69 0.483205
Target:  5'- cCGcCGCCCcuGCCcGCGUCCCGaccgcgaucgccgGUCCCg -3'
miRNA:   3'- -GC-GCGGG--UGGcCGCAGGGCa------------UAGGGa -5'
24762 5' -62.6 NC_005264.1 + 36756 0.69 0.460158
Target:  5'- gGCGCCgGCCGGCG--CCGUcgCCgCUu -3'
miRNA:   3'- gCGCGGgUGGCCGCagGGCAuaGG-GA- -5'
24762 5' -62.6 NC_005264.1 + 155782 0.69 0.460158
Target:  5'- gGCGCCgGCCGGCG--CCGUcgCCgCUu -3'
miRNA:   3'- gCGCGGgUGGCCGCagGGCAuaGG-GA- -5'
24762 5' -62.6 NC_005264.1 + 20151 0.69 0.460158
Target:  5'- gGCGCgCCGCCGGCG-CCCaagAUCgCg -3'
miRNA:   3'- gCGCG-GGUGGCCGCaGGGca-UAGgGa -5'
24762 5' -62.6 NC_005264.1 + 127344 0.7 0.434307
Target:  5'- uGCGCCg--CGGCGUCgCCGUcGUCCCc -3'
miRNA:   3'- gCGCGGgugGCCGCAG-GGCA-UAGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.