Results 41 - 49 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 24762 | 5' | -62.6 | NC_005264.1 | + | 127344 | 0.7 | 0.434307 |
|
Target: 5'- uGCGCCg--CGGCGUCgCCGUcGUCCCc -3' miRNA: 3'- gCGCGGgugGCCGCAG-GGCA-UAGGGa -5' |
|||||||
| 24762 | 5' | -62.6 | NC_005264.1 | + | 12355 | 0.7 | 0.409319 |
|
Target: 5'- -aCGCCCAUCGGCGacgcUCUCGUcggagggcgGUCCCg -3' miRNA: 3'- gcGCGGGUGGCCGC----AGGGCA---------UAGGGa -5' |
|||||||
| 24762 | 5' | -62.6 | NC_005264.1 | + | 131382 | 0.7 | 0.409319 |
|
Target: 5'- -aCGCCCAUCGGCGacgcUCUCGUcggagggcgGUCCCg -3' miRNA: 3'- gcGCGGGUGGCCGC----AGGGCA---------UAGGGa -5' |
|||||||
| 24762 | 5' | -62.6 | NC_005264.1 | + | 161679 | 0.7 | 0.401191 |
|
Target: 5'- uCGCGCgCCggcagacuggcgGCCGGauCGUCCCGUGcgCCCg -3' miRNA: 3'- -GCGCG-GG------------UGGCC--GCAGGGCAUa-GGGa -5' |
|||||||
| 24762 | 5' | -62.6 | NC_005264.1 | + | 42653 | 0.7 | 0.401191 |
|
Target: 5'- uCGCGCgCCggcagacuggcgGCCGGauCGUCCCGUGcgCCCg -3' miRNA: 3'- -GCGCG-GG------------UGGCC--GCAGGGCAUa-GGGa -5' |
|||||||
| 24762 | 5' | -62.6 | NC_005264.1 | + | 67387 | 0.76 | 0.184743 |
|
Target: 5'- uGCGCCCGCCGGCGcgguagCGUAUUCCa -3' miRNA: 3'- gCGCGGGUGGCCGCagg---GCAUAGGGa -5' |
|||||||
| 24762 | 5' | -62.6 | NC_005264.1 | + | 61265 | 0.77 | 0.167944 |
|
Target: 5'- gCGCGCCU--CGGCGUaCCCGUAUUCCa -3' miRNA: 3'- -GCGCGGGugGCCGCA-GGGCAUAGGGa -5' |
|||||||
| 24762 | 5' | -62.6 | NC_005264.1 | + | 161227 | 1.07 | 0.001147 |
|
Target: 5'- cCGCGCCCACCGGCGUCCCGUAUCCCUg -3' miRNA: 3'- -GCGCGGGUGGCCGCAGGGCAUAGGGA- -5' |
|||||||
| 24762 | 5' | -62.6 | NC_005264.1 | + | 42200 | 1.07 | 0.001147 |
|
Target: 5'- cCGCGCCCACCGGCGUCCCGUAUCCCUg -3' miRNA: 3'- -GCGCGGGUGGCCGCAGGGCAUAGGGA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home