miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24763 5' -52.8 NC_005264.1 + 123207 0.66 0.973033
Target:  5'- uGGGGAAgcGGAGGguccGAGGGAcGGGaGGUu -3'
miRNA:   3'- gCCCCUU--UCUCU----CUCUUUuCCC-CCAu -5'
24763 5' -52.8 NC_005264.1 + 123537 0.7 0.862031
Target:  5'- gGGGGAcuGGGcguccgcGGAGGGGGAGGGGuGGUc -3'
miRNA:   3'- gCCCCU--UUC-------UCUCUCUUUUCCC-CCAu -5'
24763 5' -52.8 NC_005264.1 + 162533 0.68 0.923229
Target:  5'- gGGGGGugggagguGGGAGAccGAGGAAGGGcucGGGUGc -3'
miRNA:   3'- gCCCCU--------UUCUCU--CUCUUUUCC---CCCAU- -5'
24763 5' -52.8 NC_005264.1 + 133917 0.67 0.948175
Target:  5'- gGGGGugGGAG-GAGGAuaauauuGGGGGcGUGa -3'
miRNA:   3'- gCCCCuuUCUCuCUCUUu------UCCCC-CAU- -5'
24763 5' -52.8 NC_005264.1 + 23985 0.67 0.952424
Target:  5'- aGuGGGAAGGGGAGguGGAuGAGGcGGGc- -3'
miRNA:   3'- gC-CCCUUUCUCUC--UCUuUUCC-CCCau -5'
24763 5' -52.8 NC_005264.1 + 132076 0.67 0.952424
Target:  5'- aGGGcGAcgAGGGGAGAGAAuuuucGGGcGGGGa- -3'
miRNA:   3'- gCCC-CU--UUCUCUCUCUU-----UUC-CCCCau -5'
24763 5' -52.8 NC_005264.1 + 150201 0.67 0.967058
Target:  5'- aCGGGGGccGGAGGGcgagcgaguGGGAcGGGGGGc- -3'
miRNA:   3'- -GCCCCUu-UCUCUC---------UCUUuUCCCCCau -5'
24763 5' -52.8 NC_005264.1 + 120441 0.67 0.967058
Target:  5'- gGGGGAAauaagcGGGGAuGAGGAAAGGGc--- -3'
miRNA:   3'- gCCCCUU------UCUCU-CUCUUUUCCCccau -5'
24763 5' -52.8 NC_005264.1 + 143587 0.67 0.967058
Target:  5'- cCGGGGcccGGAGGGAacGAGAAuGGcgcGGGGUAc -3'
miRNA:   3'- -GCCCC---UUUCUCU--CUCUUuUC---CCCCAU- -5'
24763 5' -52.8 NC_005264.1 + 131753 0.71 0.838566
Target:  5'- gCGGcccGGGAGGAG-GAGAAGAGGGaGGc- -3'
miRNA:   3'- -GCC---CCUUUCUCuCUCUUUUCCC-CCau -5'
24763 5' -52.8 NC_005264.1 + 144470 0.71 0.830082
Target:  5'- gCGGGGAGAGAccGAGAcagcuauGGGGGa- -3'
miRNA:   3'- -GCCCCUUUCUcuCUCUuuu----CCCCCau -5'
24763 5' -52.8 NC_005264.1 + 162238 0.71 0.821409
Target:  5'- gCGGGGggGGGGGGGGcuAcGGcGGGg- -3'
miRNA:   3'- -GCCCCuuUCUCUCUCuuUuCC-CCCau -5'
24763 5' -52.8 NC_005264.1 + 132692 0.84 0.219826
Target:  5'- aGGGGAAGGgaaagggaGGGGAGggGAGGGGGa- -3'
miRNA:   3'- gCCCCUUUC--------UCUCUCuuUUCCCCCau -5'
24763 5' -52.8 NC_005264.1 + 162342 0.84 0.231099
Target:  5'- aCGGaGGGAGGAGGGAGGAgcGGGGGg- -3'
miRNA:   3'- -GCC-CCUUUCUCUCUCUUuuCCCCCau -5'
24763 5' -52.8 NC_005264.1 + 118628 0.78 0.442061
Target:  5'- aGGGGAAcAGcucuGGGGAGggGGGGGGGg- -3'
miRNA:   3'- gCCCCUU-UC----UCUCUCuuUUCCCCCau -5'
24763 5' -52.8 NC_005264.1 + 120805 0.76 0.560151
Target:  5'- cCGGaaagacacGGAGGAGGGGGAGGAGGGGGa- -3'
miRNA:   3'- -GCCc-------CUUUCUCUCUCUUUUCCCCCau -5'
24763 5' -52.8 NC_005264.1 + 119951 0.76 0.58083
Target:  5'- gGGGGAAGGucGGAGAGGGcucgucGGGGGGGc- -3'
miRNA:   3'- gCCCCUUUC--UCUCUCUU------UUCCCCCau -5'
24763 5' -52.8 NC_005264.1 + 132551 0.73 0.726269
Target:  5'- aGGaGGAGAaAGAG-GAAGAGGGGGa- -3'
miRNA:   3'- gCC-CCUUUcUCUCuCUUUUCCCCCau -5'
24763 5' -52.8 NC_005264.1 + 119843 0.72 0.765896
Target:  5'- cCGGGG--GGGGGGuuAAGGGGGGGg- -3'
miRNA:   3'- -GCCCCuuUCUCUCucUUUUCCCCCau -5'
24763 5' -52.8 NC_005264.1 + 162176 0.71 0.80353
Target:  5'- aCGGGu--GGAGcGGGGAGGGGGGGg- -3'
miRNA:   3'- -GCCCcuuUCUCuCUCUUUUCCCCCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.