miRNA display CGI


Results 1 - 20 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24763 5' -52.8 NC_005264.1 + 68013 0.66 0.975706
Target:  5'- gCGGGGGucGGGcAGAucuucGAGAGGGGuGGg- -3'
miRNA:   3'- -GCCCCUuuCUC-UCU-----CUUUUCCC-CCau -5'
24763 5' -52.8 NC_005264.1 + 817 0.72 0.765896
Target:  5'- cCGGGG--GGGGGGuuAAGGGGGGGg- -3'
miRNA:   3'- -GCCCCuuUCUCUCucUUUUCCCCCau -5'
24763 5' -52.8 NC_005264.1 + 925 0.76 0.58083
Target:  5'- gGGGGAAGGucGGAGAGGGcucgucGGGGGGGc- -3'
miRNA:   3'- gCCCCUUUC--UCUCUCUU------UUCCCCCau -5'
24763 5' -52.8 NC_005264.1 + 43025 1.07 0.007438
Target:  5'- uCGGGGAAAGAGAGAGAAAAGGGGGUAg -3'
miRNA:   3'- -GCCCCUUUCUCUCUCUUUUCCCCCAU- -5'
24763 5' -52.8 NC_005264.1 + 119129 0.66 0.973033
Target:  5'- uGGGGGAGG-GcGAGGAcgcauGGGGGa- -3'
miRNA:   3'- gCCCCUUUCuCuCUCUUuu---CCCCCau -5'
24763 5' -52.8 NC_005264.1 + 19274 0.66 0.970152
Target:  5'- cCGGGGAcGGcAGAGuc-GGGGGaGGGUAg -3'
miRNA:   3'- -GCCCCUuUC-UCUCucuUUUCC-CCCAU- -5'
24763 5' -52.8 NC_005264.1 + 31174 0.67 0.967058
Target:  5'- aCGGGGGccGGAGGGcgagcgaguGGGAcGGGGGGc- -3'
miRNA:   3'- -GCCCCUu-UCUCUC---------UCUUuUCCCCCau -5'
24763 5' -52.8 NC_005264.1 + 13049 0.67 0.952424
Target:  5'- aGGGcGAcgAGGGGAGAGAAuuuucGGGcGGGGa- -3'
miRNA:   3'- gCCC-CU--UUCUCUCUCUU-----UUC-CCCCau -5'
24763 5' -52.8 NC_005264.1 + 85906 0.7 0.870462
Target:  5'- gCGGGGuggcGAcGGAGAauaGAAGGGGGUc -3'
miRNA:   3'- -GCCCCuuu-CUcUCUCU---UUUCCCCCAu -5'
24763 5' -52.8 NC_005264.1 + 43149 0.71 0.80353
Target:  5'- aCGGGu--GGAGcGGGGAGGGGGGGg- -3'
miRNA:   3'- -GCCCcuuUCUCuCUCUUUUCCCCCau -5'
24763 5' -52.8 NC_005264.1 + 4510 0.7 0.862031
Target:  5'- gGGGGAcuGGGcguccgcGGAGGGGGAGGGGuGGUc -3'
miRNA:   3'- gCCCCU--UUC-------UCUCUCUUUUCCC-CCAu -5'
24763 5' -52.8 NC_005264.1 + 43506 0.68 0.923229
Target:  5'- gGGGGGugggagguGGGAGAccGAGGAAGGGcucGGGUGc -3'
miRNA:   3'- gCCCCU--------UUCUCU--CUCUUUUCC---CCCAU- -5'
24763 5' -52.8 NC_005264.1 + 41819 0.66 0.973309
Target:  5'- cCGGGGAAGGcGAGcauaagaugggaaaGGAAGugcauaugggagcucGGGGGGg- -3'
miRNA:   3'- -GCCCCUUUCuCUC--------------UCUUU---------------UCCCCCau -5'
24763 5' -52.8 NC_005264.1 + 12727 0.71 0.838566
Target:  5'- gCGGcccGGGAGGAG-GAGAAGAGGGaGGc- -3'
miRNA:   3'- -GCC---CCUUUCUCuCUCUUUUCCC-CCau -5'
24763 5' -52.8 NC_005264.1 + 44092 0.66 0.973033
Target:  5'- aCGGGGAgcuugcccgAAGAcuGGGGAGGGGGcGGGa- -3'
miRNA:   3'- -GCCCCU---------UUCUc-UCUCUUUUCC-CCCau -5'
24763 5' -52.8 NC_005264.1 + 92541 0.67 0.948175
Target:  5'- gCGGGGAacAAGAuGGAGu---GGGGGa- -3'
miRNA:   3'- -GCCCCU--UUCUcUCUCuuuuCCCCCau -5'
24763 5' -52.8 NC_005264.1 + 43211 0.71 0.821409
Target:  5'- gCGGGGggGGGGGGGGcuAcGGcGGGg- -3'
miRNA:   3'- -GCCCCuuUCUCUCUCuuUuCC-CCCau -5'
24763 5' -52.8 NC_005264.1 + 13524 0.73 0.726269
Target:  5'- aGGaGGAGAaAGAG-GAAGAGGGGGa- -3'
miRNA:   3'- gCC-CCUUUcUCUCuCUUUUCCCCCau -5'
24763 5' -52.8 NC_005264.1 + 4180 0.66 0.973033
Target:  5'- uGGGGAAgcGGAGGguccGAGGGAcGGGaGGUu -3'
miRNA:   3'- gCCCCUU--UCUCU----CUCUUUuCCC-CCAu -5'
24763 5' -52.8 NC_005264.1 + 1414 0.67 0.967058
Target:  5'- gGGGGAAauaagcGGGGAuGAGGAAAGGGc--- -3'
miRNA:   3'- gCCCCUU------UCUCU-CUCUUUUCCCccau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.