miRNA display CGI


Results 21 - 38 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24806 3' -53.5 NC_005284.1 + 16863 0.69 0.584292
Target:  5'- -gGCGGGUcguaUGCGCAggugcugGCCGGUGCGUu -3'
miRNA:   3'- ugCGUUCA----ACGUGUa------UGGCCGUGCGu -5'
24806 3' -53.5 NC_005284.1 + 16621 0.69 0.595505
Target:  5'- cCGuCGAc--GCGCGaACCGGCACGCAg -3'
miRNA:   3'- uGC-GUUcaaCGUGUaUGGCCGUGCGU- -5'
24806 3' -53.5 NC_005284.1 + 26345 0.69 0.618021
Target:  5'- aGCGCg----GCACGgucaacGCCGGCGCGCc -3'
miRNA:   3'- -UGCGuucaaCGUGUa-----UGGCCGUGCGu -5'
24806 3' -53.5 NC_005284.1 + 10658 0.68 0.640589
Target:  5'- uGCGCGAGgaacuggUGCGCGccGCgGGCGCGa- -3'
miRNA:   3'- -UGCGUUCa------ACGUGUa-UGgCCGUGCgu -5'
24806 3' -53.5 NC_005284.1 + 17684 0.68 0.689997
Target:  5'- cGCGCGAucgUGCGCGacgcccugaaucucGCCGGCGCGUc -3'
miRNA:   3'- -UGCGUUca-ACGUGUa-------------UGGCCGUGCGu -5'
24806 3' -53.5 NC_005284.1 + 43455 0.68 0.651866
Target:  5'- gACGCGcAGUUGCGCGauccgcUGCCGgauguugucgaGCAUGCGc -3'
miRNA:   3'- -UGCGU-UCAACGUGU------AUGGC-----------CGUGCGU- -5'
24806 3' -53.5 NC_005284.1 + 15793 0.69 0.606752
Target:  5'- cGCGCAugcGUUGCGuc-GCCaGCGCGCAg -3'
miRNA:   3'- -UGCGUu--CAACGUguaUGGcCGUGCGU- -5'
24806 3' -53.5 NC_005284.1 + 22001 0.73 0.360429
Target:  5'- cGCGCAGGccgacGCACcgGCagaGGCGCGCGa -3'
miRNA:   3'- -UGCGUUCaa---CGUGuaUGg--CCGUGCGU- -5'
24806 3' -53.5 NC_005284.1 + 28423 0.74 0.310518
Target:  5'- cGCGCGuGUUGUAg--ACCGGCGCGCc -3'
miRNA:   3'- -UGCGUuCAACGUguaUGGCCGUGCGu -5'
24806 3' -53.5 NC_005284.1 + 33183 0.67 0.707735
Target:  5'- cGCGCGAGaucUUGCccaacgcuucgGCAUGCCGcuGCGCGUc -3'
miRNA:   3'- -UGCGUUC---AACG-----------UGUAUGGC--CGUGCGu -5'
24806 3' -53.5 NC_005284.1 + 8905 0.67 0.729621
Target:  5'- -gGCAAGUUGCGCGgcaGCaguGGCuuCGCGc -3'
miRNA:   3'- ugCGUUCAACGUGUa--UGg--CCGu-GCGU- -5'
24806 3' -53.5 NC_005284.1 + 32326 0.66 0.751098
Target:  5'- uUGCAGGUaGUagaaGCGUGCCG-CACGCu -3'
miRNA:   3'- uGCGUUCAaCG----UGUAUGGCcGUGCGu -5'
24806 3' -53.5 NC_005284.1 + 27647 0.66 0.758499
Target:  5'- cCGC-AGUUGCAUcgcagaugcgucgcgGCgGGCACGCGc -3'
miRNA:   3'- uGCGuUCAACGUGua-------------UGgCCGUGCGU- -5'
24806 3' -53.5 NC_005284.1 + 33584 0.66 0.772065
Target:  5'- -aGCcGGgcgUGCACGUcaggACCGGCucCGCGu -3'
miRNA:   3'- ugCGuUCa--ACGUGUA----UGGCCGu-GCGU- -5'
24806 3' -53.5 NC_005284.1 + 36302 0.66 0.772065
Target:  5'- cACGCcga--GCGCGUucUCGGCGCGCAc -3'
miRNA:   3'- -UGCGuucaaCGUGUAu-GGCCGUGCGU- -5'
24806 3' -53.5 NC_005284.1 + 4419 0.66 0.782327
Target:  5'- -aGCGGGUUaagacgGCACAcacCCGGCacACGCAg -3'
miRNA:   3'- ugCGUUCAA------CGUGUau-GGCCG--UGCGU- -5'
24806 3' -53.5 NC_005284.1 + 43851 0.66 0.782327
Target:  5'- gGCGaCGAGgccgGC-CAUGCgGGCcuGCGCAu -3'
miRNA:   3'- -UGC-GUUCaa--CGuGUAUGgCCG--UGCGU- -5'
24806 3' -53.5 NC_005284.1 + 54174 1.09 0.001355
Target:  5'- cACGCAAGUUGCACAUACCGGCACGCAg -3'
miRNA:   3'- -UGCGUUCAACGUGUAUGGCCGUGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.