Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24806 | 3' | -53.5 | NC_005284.1 | + | 40832 | 0.67 | 0.707735 |
Target: 5'- uUGCG---UGCGCGU-CCGGCACuGCAa -3' miRNA: 3'- uGCGUucaACGUGUAuGGCCGUG-CGU- -5' |
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24806 | 3' | -53.5 | NC_005284.1 | + | 10137 | 0.68 | 0.663124 |
Target: 5'- gGCGCAgacGGcgcucGCGCGUACgGGCACGa- -3' miRNA: 3'- -UGCGU---UCaa---CGUGUAUGgCCGUGCgu -5' |
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24806 | 3' | -53.5 | NC_005284.1 | + | 42026 | 0.68 | 0.663124 |
Target: 5'- uCGCGA---GCGCGUGCCGGCcgaGCGg -3' miRNA: 3'- uGCGUUcaaCGUGUAUGGCCGug-CGU- -5' |
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24806 | 3' | -53.5 | NC_005284.1 | + | 45507 | 0.68 | 0.663124 |
Target: 5'- cACGCGAuGUUGUACcgAUgGGaCGCGUAa -3' miRNA: 3'- -UGCGUU-CAACGUGuaUGgCC-GUGCGU- -5' |
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24806 | 3' | -53.5 | NC_005284.1 | + | 49113 | 0.68 | 0.685537 |
Target: 5'- aGCGCGAGggcgaagUGUuCAUGCguuuuaaGGCGCGCGu -3' miRNA: 3'- -UGCGUUCa------ACGuGUAUGg------CCGUGCGU- -5' |
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24806 | 3' | -53.5 | NC_005284.1 | + | 19303 | 0.68 | 0.685537 |
Target: 5'- gACGCAAGUacaugGCAUcgAUCGGCGuggGCAu -3' miRNA: 3'- -UGCGUUCAa----CGUGuaUGGCCGUg--CGU- -5' |
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24806 | 3' | -53.5 | NC_005284.1 | + | 21887 | 0.67 | 0.693336 |
Target: 5'- gACGCAgcGGUUGCggaacgcguuuucgGCGUcGCCGGCgacgaucaGCGCGa -3' miRNA: 3'- -UGCGU--UCAACG--------------UGUA-UGGCCG--------UGCGU- -5' |
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24806 | 3' | -53.5 | NC_005284.1 | + | 35649 | 0.67 | 0.707735 |
Target: 5'- uGCGuCAGGUU-CACgAUGCCGuucGCGCGCGg -3' miRNA: 3'- -UGC-GUUCAAcGUG-UAUGGC---CGUGCGU- -5' |
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24806 | 3' | -53.5 | NC_005284.1 | + | 12332 | 0.67 | 0.707735 |
Target: 5'- aACGCAGGgagGCGau--CCGGCuucGCGCGa -3' miRNA: 3'- -UGCGUUCaa-CGUguauGGCCG---UGCGU- -5' |
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24806 | 3' | -53.5 | NC_005284.1 | + | 9775 | 0.68 | 0.640589 |
Target: 5'- gGCGCAAGcu-CACGUcgcaaCGGCGCGCGc -3' miRNA: 3'- -UGCGUUCaacGUGUAug---GCCGUGCGU- -5' |
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24806 | 3' | -53.5 | NC_005284.1 | + | 10658 | 0.68 | 0.640589 |
Target: 5'- uGCGCGAGgaacuggUGCGCGccGCgGGCGCGa- -3' miRNA: 3'- -UGCGUUCa------ACGUGUa-UGgCCGUGCgu -5' |
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24806 | 3' | -53.5 | NC_005284.1 | + | 26345 | 0.69 | 0.618021 |
Target: 5'- aGCGCg----GCACGgucaacGCCGGCGCGCc -3' miRNA: 3'- -UGCGuucaaCGUGUa-----UGGCCGUGCGu -5' |
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24806 | 3' | -53.5 | NC_005284.1 | + | 8700 | 0.72 | 0.425369 |
Target: 5'- gUGCAGGUcacggUGCGCGcgcucgACgCGGCGCGCAg -3' miRNA: 3'- uGCGUUCA-----ACGUGUa-----UG-GCCGUGCGU- -5' |
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24806 | 3' | -53.5 | NC_005284.1 | + | 37703 | 0.71 | 0.465466 |
Target: 5'- -gGCGGGgcGCGCAUACgGGC-CGCc -3' miRNA: 3'- ugCGUUCaaCGUGUAUGgCCGuGCGu -5' |
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24806 | 3' | -53.5 | NC_005284.1 | + | 12389 | 0.71 | 0.496788 |
Target: 5'- aGCGCGGGaggaggGgAUucGCCGGCGCGCAa -3' miRNA: 3'- -UGCGUUCaa----CgUGuaUGGCCGUGCGU- -5' |
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24806 | 3' | -53.5 | NC_005284.1 | + | 38984 | 0.71 | 0.496788 |
Target: 5'- cCGCGGGcUGCGC--GCUGGCgACGCAa -3' miRNA: 3'- uGCGUUCaACGUGuaUGGCCG-UGCGU- -5' |
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24806 | 3' | -53.5 | NC_005284.1 | + | 41315 | 0.7 | 0.529024 |
Target: 5'- aGCGUcGGaUGCGCAUGCaagcuucggCGGCGCGUAu -3' miRNA: 3'- -UGCGuUCaACGUGUAUG---------GCCGUGCGU- -5' |
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24806 | 3' | -53.5 | NC_005284.1 | + | 50165 | 0.7 | 0.529024 |
Target: 5'- uGCGCAGucGUUGCGCAacgcgAUCGGCGC-CAa -3' miRNA: 3'- -UGCGUU--CAACGUGUa----UGGCCGUGcGU- -5' |
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24806 | 3' | -53.5 | NC_005284.1 | + | 16863 | 0.69 | 0.584292 |
Target: 5'- -gGCGGGUcguaUGCGCAggugcugGCCGGUGCGUu -3' miRNA: 3'- ugCGUUCA----ACGUGUa------UGGCCGUGCGu -5' |
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24806 | 3' | -53.5 | NC_005284.1 | + | 16621 | 0.69 | 0.595505 |
Target: 5'- cCGuCGAc--GCGCGaACCGGCACGCAg -3' miRNA: 3'- uGC-GUUcaaCGUGUaUGGCCGUGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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