miRNA display CGI


Results 1 - 20 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24806 3' -53.5 NC_005284.1 + 601 0.66 0.772065
Target:  5'- -gGCAAGc-GCccuGCGUGCCGGUAUGUg -3'
miRNA:   3'- ugCGUUCaaCG---UGUAUGGCCGUGCGu -5'
24806 3' -53.5 NC_005284.1 + 4419 0.66 0.782327
Target:  5'- -aGCGGGUUaagacgGCACAcacCCGGCacACGCAg -3'
miRNA:   3'- ugCGUUCAA------CGUGUau-GGCCG--UGCGU- -5'
24806 3' -53.5 NC_005284.1 + 7998 0.73 0.396683
Target:  5'- cGCGCGAGUgacgacgcGCACAUGCaGGCgaauGCGCGg -3'
miRNA:   3'- -UGCGUUCAa-------CGUGUAUGgCCG----UGCGU- -5'
24806 3' -53.5 NC_005284.1 + 8700 0.72 0.425369
Target:  5'- gUGCAGGUcacggUGCGCGcgcucgACgCGGCGCGCAg -3'
miRNA:   3'- uGCGUUCA-----ACGUGUa-----UG-GCCGUGCGU- -5'
24806 3' -53.5 NC_005284.1 + 8905 0.67 0.729621
Target:  5'- -gGCAAGUUGCGCGgcaGCaguGGCuuCGCGc -3'
miRNA:   3'- ugCGUUCAACGUGUa--UGg--CCGu-GCGU- -5'
24806 3' -53.5 NC_005284.1 + 9775 0.68 0.640589
Target:  5'- gGCGCAAGcu-CACGUcgcaaCGGCGCGCGc -3'
miRNA:   3'- -UGCGUUCaacGUGUAug---GCCGUGCGU- -5'
24806 3' -53.5 NC_005284.1 + 10137 0.68 0.663124
Target:  5'- gGCGCAgacGGcgcucGCGCGUACgGGCACGa- -3'
miRNA:   3'- -UGCGU---UCaa---CGUGUAUGgCCGUGCgu -5'
24806 3' -53.5 NC_005284.1 + 10658 0.68 0.640589
Target:  5'- uGCGCGAGgaacuggUGCGCGccGCgGGCGCGa- -3'
miRNA:   3'- -UGCGUUCa------ACGUGUa-UGgCCGUGCgu -5'
24806 3' -53.5 NC_005284.1 + 12332 0.67 0.707735
Target:  5'- aACGCAGGgagGCGau--CCGGCuucGCGCGa -3'
miRNA:   3'- -UGCGUUCaa-CGUguauGGCCG---UGCGU- -5'
24806 3' -53.5 NC_005284.1 + 12389 0.71 0.496788
Target:  5'- aGCGCGGGaggaggGgAUucGCCGGCGCGCAa -3'
miRNA:   3'- -UGCGUUCaa----CgUGuaUGGCCGUGCGU- -5'
24806 3' -53.5 NC_005284.1 + 15793 0.69 0.606752
Target:  5'- cGCGCAugcGUUGCGuc-GCCaGCGCGCAg -3'
miRNA:   3'- -UGCGUu--CAACGUguaUGGcCGUGCGU- -5'
24806 3' -53.5 NC_005284.1 + 16146 0.67 0.718723
Target:  5'- cGCGCAGccGUgggGCACAUcgcugaugggGCuCGGCGCGUc -3'
miRNA:   3'- -UGCGUU--CAa--CGUGUA----------UG-GCCGUGCGu -5'
24806 3' -53.5 NC_005284.1 + 16621 0.69 0.595505
Target:  5'- cCGuCGAc--GCGCGaACCGGCACGCAg -3'
miRNA:   3'- uGC-GUUcaaCGUGUaUGGCCGUGCGU- -5'
24806 3' -53.5 NC_005284.1 + 16863 0.69 0.584292
Target:  5'- -gGCGGGUcguaUGCGCAggugcugGCCGGUGCGUu -3'
miRNA:   3'- ugCGUUCA----ACGUGUa------UGGCCGUGCGu -5'
24806 3' -53.5 NC_005284.1 + 17684 0.68 0.689997
Target:  5'- cGCGCGAucgUGCGCGacgcccugaaucucGCCGGCGCGUc -3'
miRNA:   3'- -UGCGUUca-ACGUGUa-------------UGGCCGUGCGu -5'
24806 3' -53.5 NC_005284.1 + 19303 0.68 0.685537
Target:  5'- gACGCAAGUacaugGCAUcgAUCGGCGuggGCAu -3'
miRNA:   3'- -UGCGUUCAa----CGUGuaUGGCCGUg--CGU- -5'
24806 3' -53.5 NC_005284.1 + 21887 0.67 0.693336
Target:  5'- gACGCAgcGGUUGCggaacgcguuuucgGCGUcGCCGGCgacgaucaGCGCGa -3'
miRNA:   3'- -UGCGU--UCAACG--------------UGUA-UGGCCG--------UGCGU- -5'
24806 3' -53.5 NC_005284.1 + 22001 0.73 0.360429
Target:  5'- cGCGCAGGccgacGCACcgGCagaGGCGCGCGa -3'
miRNA:   3'- -UGCGUUCaa---CGUGuaUGg--CCGUGCGU- -5'
24806 3' -53.5 NC_005284.1 + 26345 0.69 0.618021
Target:  5'- aGCGCg----GCACGgucaacGCCGGCGCGCc -3'
miRNA:   3'- -UGCGuucaaCGUGUa-----UGGCCGUGCGu -5'
24806 3' -53.5 NC_005284.1 + 27647 0.66 0.758499
Target:  5'- cCGC-AGUUGCAUcgcagaugcgucgcgGCgGGCACGCGc -3'
miRNA:   3'- uGCGuUCAACGUGua-------------UGgCCGUGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.