miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24806 3' -53.5 NC_005284.1 + 54174 1.09 0.001355
Target:  5'- cACGCAAGUUGCACAUACCGGCACGCAg -3'
miRNA:   3'- -UGCGUUCAACGUGUAUGGCCGUGCGU- -5'
24806 3' -53.5 NC_005284.1 + 28423 0.74 0.310518
Target:  5'- cGCGCGuGUUGUAg--ACCGGCGCGCc -3'
miRNA:   3'- -UGCGUuCAACGUguaUGGCCGUGCGu -5'
24806 3' -53.5 NC_005284.1 + 22001 0.73 0.360429
Target:  5'- cGCGCAGGccgacGCACcgGCagaGGCGCGCGa -3'
miRNA:   3'- -UGCGUUCaa---CGUGuaUGg--CCGUGCGU- -5'
24806 3' -53.5 NC_005284.1 + 7998 0.73 0.396683
Target:  5'- cGCGCGAGUgacgacgcGCACAUGCaGGCgaauGCGCGg -3'
miRNA:   3'- -UGCGUUCAa-------CGUGUAUGgCCG----UGCGU- -5'
24806 3' -53.5 NC_005284.1 + 8700 0.72 0.425369
Target:  5'- gUGCAGGUcacggUGCGCGcgcucgACgCGGCGCGCAg -3'
miRNA:   3'- uGCGUUCA-----ACGUGUa-----UG-GCCGUGCGU- -5'
24806 3' -53.5 NC_005284.1 + 37703 0.71 0.465466
Target:  5'- -gGCGGGgcGCGCAUACgGGC-CGCc -3'
miRNA:   3'- ugCGUUCaaCGUGUAUGgCCGuGCGu -5'
24806 3' -53.5 NC_005284.1 + 38984 0.71 0.496788
Target:  5'- cCGCGGGcUGCGC--GCUGGCgACGCAa -3'
miRNA:   3'- uGCGUUCaACGUGuaUGGCCG-UGCGU- -5'
24806 3' -53.5 NC_005284.1 + 12389 0.71 0.496788
Target:  5'- aGCGCGGGaggaggGgAUucGCCGGCGCGCAa -3'
miRNA:   3'- -UGCGUUCaa----CgUGuaUGGCCGUGCGU- -5'
24806 3' -53.5 NC_005284.1 + 41315 0.7 0.529024
Target:  5'- aGCGUcGGaUGCGCAUGCaagcuucggCGGCGCGUAu -3'
miRNA:   3'- -UGCGuUCaACGUGUAUG---------GCCGUGCGU- -5'
24806 3' -53.5 NC_005284.1 + 50165 0.7 0.529024
Target:  5'- uGCGCAGucGUUGCGCAacgcgAUCGGCGC-CAa -3'
miRNA:   3'- -UGCGUU--CAACGUGUa----UGGCCGUGcGU- -5'
24806 3' -53.5 NC_005284.1 + 16863 0.69 0.584292
Target:  5'- -gGCGGGUcguaUGCGCAggugcugGCCGGUGCGUu -3'
miRNA:   3'- ugCGUUCA----ACGUGUa------UGGCCGUGCGu -5'
24806 3' -53.5 NC_005284.1 + 16621 0.69 0.595505
Target:  5'- cCGuCGAc--GCGCGaACCGGCACGCAg -3'
miRNA:   3'- uGC-GUUcaaCGUGUaUGGCCGUGCGU- -5'
24806 3' -53.5 NC_005284.1 + 15793 0.69 0.606752
Target:  5'- cGCGCAugcGUUGCGuc-GCCaGCGCGCAg -3'
miRNA:   3'- -UGCGUu--CAACGUguaUGGcCGUGCGU- -5'
24806 3' -53.5 NC_005284.1 + 26345 0.69 0.618021
Target:  5'- aGCGCg----GCACGgucaacGCCGGCGCGCc -3'
miRNA:   3'- -UGCGuucaaCGUGUa-----UGGCCGUGCGu -5'
24806 3' -53.5 NC_005284.1 + 9775 0.68 0.640589
Target:  5'- gGCGCAAGcu-CACGUcgcaaCGGCGCGCGc -3'
miRNA:   3'- -UGCGUUCaacGUGUAug---GCCGUGCGU- -5'
24806 3' -53.5 NC_005284.1 + 10658 0.68 0.640589
Target:  5'- uGCGCGAGgaacuggUGCGCGccGCgGGCGCGa- -3'
miRNA:   3'- -UGCGUUCa------ACGUGUa-UGgCCGUGCgu -5'
24806 3' -53.5 NC_005284.1 + 43455 0.68 0.651866
Target:  5'- gACGCGcAGUUGCGCGauccgcUGCCGgauguugucgaGCAUGCGc -3'
miRNA:   3'- -UGCGU-UCAACGUGU------AUGGC-----------CGUGCGU- -5'
24806 3' -53.5 NC_005284.1 + 10137 0.68 0.663124
Target:  5'- gGCGCAgacGGcgcucGCGCGUACgGGCACGa- -3'
miRNA:   3'- -UGCGU---UCaa---CGUGUAUGgCCGUGCgu -5'
24806 3' -53.5 NC_005284.1 + 42026 0.68 0.663124
Target:  5'- uCGCGA---GCGCGUGCCGGCcgaGCGg -3'
miRNA:   3'- uGCGUUcaaCGUGUAUGGCCGug-CGU- -5'
24806 3' -53.5 NC_005284.1 + 45507 0.68 0.663124
Target:  5'- cACGCGAuGUUGUACcgAUgGGaCGCGUAa -3'
miRNA:   3'- -UGCGUU-CAACGUGuaUGgCC-GUGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.