Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24806 | 5' | -51.7 | NC_005284.1 | + | 28640 | 0.7 | 0.733529 |
Target: 5'- aGgGAGuucCGACGUCagCGCGCGAACa-- -3' miRNA: 3'- gUgCUU---GCUGCAGa-GCGCGCUUGaac -5' |
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24806 | 5' | -51.7 | NC_005284.1 | + | 33112 | 0.68 | 0.805191 |
Target: 5'- aGCGGGCGAUGcugcCUCuGCGUGAACg-- -3' miRNA: 3'- gUGCUUGCUGCa---GAG-CGCGCUUGaac -5' |
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24806 | 5' | -51.7 | NC_005284.1 | + | 33158 | 0.68 | 0.824157 |
Target: 5'- gCACGcugcuCGGCGUCgagcgcggCGCGCGAGauCUUGc -3' miRNA: 3'- -GUGCuu---GCUGCAGa-------GCGCGCUU--GAAC- -5' |
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24806 | 5' | -51.7 | NC_005284.1 | + | 37189 | 0.67 | 0.842291 |
Target: 5'- gACGAGCGcgaccguguaacGCGUCUUGCGUucGCUg- -3' miRNA: 3'- gUGCUUGC------------UGCAGAGCGCGcuUGAac -5' |
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24806 | 5' | -51.7 | NC_005284.1 | + | 38834 | 0.66 | 0.911746 |
Target: 5'- gGCGAACGugaggccgGCGUCgCGCGCcGACg-- -3' miRNA: 3'- gUGCUUGC--------UGCAGaGCGCGcUUGaac -5' |
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24806 | 5' | -51.7 | NC_005284.1 | + | 40157 | 0.69 | 0.765109 |
Target: 5'- aAUucACGGCGUCgagguagCGCGCGAGCg-- -3' miRNA: 3'- gUGcuUGCUGCAGa------GCGCGCUUGaac -5' |
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24806 | 5' | -51.7 | NC_005284.1 | + | 41007 | 0.67 | 0.875763 |
Target: 5'- gCugGAACGGCGaUCgUCGCGgaGGACg-- -3' miRNA: 3'- -GugCUUGCUGC-AG-AGCGCg-CUUGaac -5' |
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24806 | 5' | -51.7 | NC_005284.1 | + | 41386 | 0.66 | 0.911746 |
Target: 5'- cCGCGGucACGAUGUUUCGCGaguGGCUa- -3' miRNA: 3'- -GUGCU--UGCUGCAGAGCGCgc-UUGAac -5' |
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24806 | 5' | -51.7 | NC_005284.1 | + | 42430 | 0.66 | 0.8835 |
Target: 5'- aACGAgcccacccGCGGCGaaUCGCGCGAAg--- -3' miRNA: 3'- gUGCU--------UGCUGCagAGCGCGCUUgaac -5' |
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24806 | 5' | -51.7 | NC_005284.1 | + | 43112 | 0.66 | 0.890973 |
Target: 5'- uUACGAGCGAC--CUUGCGCGGuGCg-- -3' miRNA: 3'- -GUGCUUGCUGcaGAGCGCGCU-UGaac -5' |
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24806 | 5' | -51.7 | NC_005284.1 | + | 43618 | 0.69 | 0.785478 |
Target: 5'- cCGCGcGCGGCGgccgCg-GCGCGAGCUg- -3' miRNA: 3'- -GUGCuUGCUGCa---GagCGCGCUUGAac -5' |
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24806 | 5' | -51.7 | NC_005284.1 | + | 43948 | 0.66 | 0.8835 |
Target: 5'- gCGCG-GCGACGagagCUUGCGgGAGCa-- -3' miRNA: 3'- -GUGCuUGCUGCa---GAGCGCgCUUGaac -5' |
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24806 | 5' | -51.7 | NC_005284.1 | + | 44887 | 0.75 | 0.451443 |
Target: 5'- gCGCGAGCGACGcuUCggCGCGCuGAGCUc- -3' miRNA: 3'- -GUGCUUGCUGC--AGa-GCGCG-CUUGAac -5' |
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24806 | 5' | -51.7 | NC_005284.1 | + | 44994 | 0.66 | 0.8835 |
Target: 5'- uGCcGGCGACGUUggcgCGCGCcguugcgacguGAGCUUGc -3' miRNA: 3'- gUGcUUGCUGCAGa---GCGCG-----------CUUGAAC- -5' |
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24806 | 5' | -51.7 | NC_005284.1 | + | 46790 | 0.68 | 0.824157 |
Target: 5'- gCAUGuGCG-CGUCgucacucgcgCGCGCGAACUUc -3' miRNA: 3'- -GUGCuUGCuGCAGa---------GCGCGCUUGAAc -5' |
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24806 | 5' | -51.7 | NC_005284.1 | + | 48336 | 0.66 | 0.911094 |
Target: 5'- gGCGG-CGGCGagaugauUCUCGCGCuGGcACUUGc -3' miRNA: 3'- gUGCUuGCUGC-------AGAGCGCG-CU-UGAAC- -5' |
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24806 | 5' | -51.7 | NC_005284.1 | + | 48516 | 0.69 | 0.785478 |
Target: 5'- gGCGGGCGugGgaauaCGCGCGAAUa-- -3' miRNA: 3'- gUGCUUGCugCaga--GCGCGCUUGaac -5' |
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24806 | 5' | -51.7 | NC_005284.1 | + | 50440 | 0.66 | 0.890973 |
Target: 5'- aGCGAGCGcCuUCUCGCcgGCGGAUUUc -3' miRNA: 3'- gUGCUUGCuGcAGAGCG--CGCUUGAAc -5' |
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24806 | 5' | -51.7 | NC_005284.1 | + | 51475 | 0.68 | 0.814773 |
Target: 5'- aGCGAugGGCGgugaUCGCGCGc-UUUGg -3' miRNA: 3'- gUGCUugCUGCag--AGCGCGCuuGAAC- -5' |
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24806 | 5' | -51.7 | NC_005284.1 | + | 54210 | 1.09 | 0.002613 |
Target: 5'- cCACGAACGACGUCUCGCGCGAACUUGa -3' miRNA: 3'- -GUGCUUGCUGCAGAGCGCGCUUGAAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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