Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24806 | 5' | -51.7 | NC_005284.1 | + | 6583 | 0.66 | 0.9051 |
Target: 5'- aCACGuacGCGugGcCgcuGCGCGAGCUg- -3' miRNA: 3'- -GUGCu--UGCugCaGag-CGCGCUUGAac -5' |
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24806 | 5' | -51.7 | NC_005284.1 | + | 7014 | 0.66 | 0.890973 |
Target: 5'- cCGCGAGCGcCGcCUCGaucugcuuaCGCGGACg-- -3' miRNA: 3'- -GUGCUUGCuGCaGAGC---------GCGCUUGaac -5' |
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24806 | 5' | -51.7 | NC_005284.1 | + | 8282 | 0.67 | 0.867765 |
Target: 5'- uGCGAGCaGAUGUCgucCGC-CGAGCUg- -3' miRNA: 3'- gUGCUUG-CUGCAGa--GCGcGCUUGAac -5' |
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24806 | 5' | -51.7 | NC_005284.1 | + | 8871 | 0.66 | 0.890973 |
Target: 5'- gCGCaGAACGACGUgcugcgcaUCGCGCGcGACa-- -3' miRNA: 3'- -GUG-CUUGCUGCAg-------AGCGCGC-UUGaac -5' |
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24806 | 5' | -51.7 | NC_005284.1 | + | 10137 | 0.7 | 0.678959 |
Target: 5'- gGCGcaGACGGCG-CUCGCGCGuACg-- -3' miRNA: 3'- gUGC--UUGCUGCaGAGCGCGCuUGaac -5' |
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24806 | 5' | -51.7 | NC_005284.1 | + | 10638 | 0.66 | 0.898174 |
Target: 5'- gACGAGCGGCGgcgaagcgCUgCGCGagGAACUg- -3' miRNA: 3'- gUGCUUGCUGCa-------GA-GCGCg-CUUGAac -5' |
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24806 | 5' | -51.7 | NC_005284.1 | + | 11633 | 0.73 | 0.549059 |
Target: 5'- gCGCGAacucgggGCGAUGUCgaugggugacaacgCGCGCGAGCUg- -3' miRNA: 3'- -GUGCU-------UGCUGCAGa-------------GCGCGCUUGAac -5' |
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24806 | 5' | -51.7 | NC_005284.1 | + | 14566 | 0.69 | 0.77537 |
Target: 5'- uGCGGACGugGUCUggcCGCgGCGAGg--- -3' miRNA: 3'- gUGCUUGCugCAGA---GCG-CGCUUgaac -5' |
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24806 | 5' | -51.7 | NC_005284.1 | + | 15719 | 0.7 | 0.733529 |
Target: 5'- gCACGGGCGucUGUCgacgCGCGCGGugUg- -3' miRNA: 3'- -GUGCUUGCu-GCAGa---GCGCGCUugAac -5' |
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24806 | 5' | -51.7 | NC_005284.1 | + | 16218 | 0.74 | 0.471686 |
Target: 5'- -cCGAACGGcCGUCUCGCuCGGGCUUu -3' miRNA: 3'- guGCUUGCU-GCAGAGCGcGCUUGAAc -5' |
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24806 | 5' | -51.7 | NC_005284.1 | + | 17675 | 0.67 | 0.859516 |
Target: 5'- gACG-ACGACGggaUCGCGCGAuaugGCg-- -3' miRNA: 3'- gUGCuUGCUGCag-AGCGCGCU----UGaac -5' |
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24806 | 5' | -51.7 | NC_005284.1 | + | 19796 | 0.66 | 0.911094 |
Target: 5'- gACGGcagcGCGGCGgcagaucUCUCGCGCGGGg--- -3' miRNA: 3'- gUGCU----UGCUGC-------AGAGCGCGCUUgaac -5' |
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24806 | 5' | -51.7 | NC_005284.1 | + | 21326 | 0.67 | 0.859516 |
Target: 5'- uGCGGGCGacuggcggggcGCGUgUCGCGCGAucaACg-- -3' miRNA: 3'- gUGCUUGC-----------UGCAgAGCGCGCU---UGaac -5' |
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24806 | 5' | -51.7 | NC_005284.1 | + | 21514 | 0.67 | 0.867765 |
Target: 5'- gGCGGcCGGCG-CUUGCGuCGAGCa-- -3' miRNA: 3'- gUGCUuGCUGCaGAGCGC-GCUUGaac -5' |
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24806 | 5' | -51.7 | NC_005284.1 | + | 22869 | 0.7 | 0.690011 |
Target: 5'- gCGgGAAgGGCGUCgagCGcCGCGAGCUg- -3' miRNA: 3'- -GUgCUUgCUGCAGa--GC-GCGCUUGAac -5' |
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24806 | 5' | -51.7 | NC_005284.1 | + | 23024 | 0.66 | 0.890973 |
Target: 5'- gACGGAUGACGacaagCUCuGCGCaGAGCg-- -3' miRNA: 3'- gUGCUUGCUGCa----GAG-CGCG-CUUGaac -5' |
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24806 | 5' | -51.7 | NC_005284.1 | + | 23493 | 0.66 | 0.9051 |
Target: 5'- -uCGAucCGGCGUggCGCGCGGACcUGu -3' miRNA: 3'- guGCUu-GCUGCAgaGCGCGCUUGaAC- -5' |
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24806 | 5' | -51.7 | NC_005284.1 | + | 25658 | 0.67 | 0.851022 |
Target: 5'- aACGGgaagGCGGCGcagccgUUCGCGCGAGCc-- -3' miRNA: 3'- gUGCU----UGCUGCa-----GAGCGCGCUUGaac -5' |
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24806 | 5' | -51.7 | NC_005284.1 | + | 27672 | 0.67 | 0.867765 |
Target: 5'- aUACGGGcCGGCGUggCGCGCGggUc-- -3' miRNA: 3'- -GUGCUU-GCUGCAgaGCGCGCuuGaac -5' |
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24806 | 5' | -51.7 | NC_005284.1 | + | 27964 | 0.74 | 0.507109 |
Target: 5'- gGCucACGACGUCgaaugcugaagccgcUCGCGCGAugUUGc -3' miRNA: 3'- gUGcuUGCUGCAG---------------AGCGCGCUugAAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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