Results 1 - 20 of 41 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24806 | 5' | -51.7 | NC_005284.1 | + | 19796 | 0.66 | 0.911094 |
Target: 5'- gACGGcagcGCGGCGgcagaucUCUCGCGCGGGg--- -3' miRNA: 3'- gUGCU----UGCUGC-------AGAGCGCGCUUgaac -5' |
|||||||
24806 | 5' | -51.7 | NC_005284.1 | + | 8282 | 0.67 | 0.867765 |
Target: 5'- uGCGAGCaGAUGUCgucCGC-CGAGCUg- -3' miRNA: 3'- gUGCUUG-CUGCAGa--GCGcGCUUGAac -5' |
|||||||
24806 | 5' | -51.7 | NC_005284.1 | + | 21514 | 0.67 | 0.867765 |
Target: 5'- gGCGGcCGGCG-CUUGCGuCGAGCa-- -3' miRNA: 3'- gUGCUuGCUGCaGAGCGC-GCUUGaac -5' |
|||||||
24806 | 5' | -51.7 | NC_005284.1 | + | 27672 | 0.67 | 0.867765 |
Target: 5'- aUACGGGcCGGCGUggCGCGCGggUc-- -3' miRNA: 3'- -GUGCUU-GCUGCAgaGCGCGCuuGaac -5' |
|||||||
24806 | 5' | -51.7 | NC_005284.1 | + | 41007 | 0.67 | 0.875763 |
Target: 5'- gCugGAACGGCGaUCgUCGCGgaGGACg-- -3' miRNA: 3'- -GugCUUGCUGC-AG-AGCGCg-CUUGaac -5' |
|||||||
24806 | 5' | -51.7 | NC_005284.1 | + | 43948 | 0.66 | 0.8835 |
Target: 5'- gCGCG-GCGACGagagCUUGCGgGAGCa-- -3' miRNA: 3'- -GUGCuUGCUGCa---GAGCGCgCUUGaac -5' |
|||||||
24806 | 5' | -51.7 | NC_005284.1 | + | 43112 | 0.66 | 0.890973 |
Target: 5'- uUACGAGCGAC--CUUGCGCGGuGCg-- -3' miRNA: 3'- -GUGCUUGCUGcaGAGCGCGCU-UGaac -5' |
|||||||
24806 | 5' | -51.7 | NC_005284.1 | + | 8871 | 0.66 | 0.890973 |
Target: 5'- gCGCaGAACGACGUgcugcgcaUCGCGCGcGACa-- -3' miRNA: 3'- -GUG-CUUGCUGCAg-------AGCGCGC-UUGaac -5' |
|||||||
24806 | 5' | -51.7 | NC_005284.1 | + | 10638 | 0.66 | 0.898174 |
Target: 5'- gACGAGCGGCGgcgaagcgCUgCGCGagGAACUg- -3' miRNA: 3'- gUGCUUGCUGCa-------GA-GCGCg-CUUGAac -5' |
|||||||
24806 | 5' | -51.7 | NC_005284.1 | + | 17675 | 0.67 | 0.859516 |
Target: 5'- gACG-ACGACGggaUCGCGCGAuaugGCg-- -3' miRNA: 3'- gUGCuUGCUGCag-AGCGCGCU----UGaac -5' |
|||||||
24806 | 5' | -51.7 | NC_005284.1 | + | 21326 | 0.67 | 0.859516 |
Target: 5'- uGCGGGCGacuggcggggcGCGUgUCGCGCGAucaACg-- -3' miRNA: 3'- gUGCUUGC-----------UGCAgAGCGCGCU---UGaac -5' |
|||||||
24806 | 5' | -51.7 | NC_005284.1 | + | 25658 | 0.67 | 0.851022 |
Target: 5'- aACGGgaagGCGGCGcagccgUUCGCGCGAGCc-- -3' miRNA: 3'- gUGCU----UGCUGCa-----GAGCGCGCUUGaac -5' |
|||||||
24806 | 5' | -51.7 | NC_005284.1 | + | 11633 | 0.73 | 0.549059 |
Target: 5'- gCGCGAacucgggGCGAUGUCgaugggugacaacgCGCGCGAGCUg- -3' miRNA: 3'- -GUGCU-------UGCUGCAGa-------------GCGCGCUUGAac -5' |
|||||||
24806 | 5' | -51.7 | NC_005284.1 | + | 10137 | 0.7 | 0.678959 |
Target: 5'- gGCGcaGACGGCG-CUCGCGCGuACg-- -3' miRNA: 3'- gUGC--UUGCUGCaGAGCGCGCuUGaac -5' |
|||||||
24806 | 5' | -51.7 | NC_005284.1 | + | 22869 | 0.7 | 0.690011 |
Target: 5'- gCGgGAAgGGCGUCgagCGcCGCGAGCUg- -3' miRNA: 3'- -GUgCUUgCUGCAGa--GC-GCGCUUGAac -5' |
|||||||
24806 | 5' | -51.7 | NC_005284.1 | + | 15719 | 0.7 | 0.733529 |
Target: 5'- gCACGGGCGucUGUCgacgCGCGCGGugUg- -3' miRNA: 3'- -GUGCUUGCu-GCAGa---GCGCGCUugAac -5' |
|||||||
24806 | 5' | -51.7 | NC_005284.1 | + | 54679 | 0.69 | 0.765109 |
Target: 5'- gGCGAA-GACGg--CGCGCGAGCg-- -3' miRNA: 3'- gUGCUUgCUGCagaGCGCGCUUGaac -5' |
|||||||
24806 | 5' | -51.7 | NC_005284.1 | + | 48516 | 0.69 | 0.785478 |
Target: 5'- gGCGGGCGugGgaauaCGCGCGAAUa-- -3' miRNA: 3'- gUGCUUGCugCaga--GCGCGCUUGaac -5' |
|||||||
24806 | 5' | -51.7 | NC_005284.1 | + | 33112 | 0.68 | 0.805191 |
Target: 5'- aGCGGGCGAUGcugcCUCuGCGUGAACg-- -3' miRNA: 3'- gUGCUUGCUGCa---GAG-CGCGCUUGaac -5' |
|||||||
24806 | 5' | -51.7 | NC_005284.1 | + | 51475 | 0.68 | 0.814773 |
Target: 5'- aGCGAugGGCGgugaUCGCGCGc-UUUGg -3' miRNA: 3'- gUGCUugCUGCag--AGCGCGCuuGAAC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home