miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24806 5' -51.7 NC_005284.1 + 54210 1.09 0.002613
Target:  5'- cCACGAACGACGUCUCGCGCGAACUUGa -3'
miRNA:   3'- -GUGCUUGCUGCAGAGCGCGCUUGAAC- -5'
24806 5' -51.7 NC_005284.1 + 44887 0.75 0.451443
Target:  5'- gCGCGAGCGACGcuUCggCGCGCuGAGCUc- -3'
miRNA:   3'- -GUGCUUGCUGC--AGa-GCGCG-CUUGAac -5'
24806 5' -51.7 NC_005284.1 + 16218 0.74 0.471686
Target:  5'- -cCGAACGGcCGUCUCGCuCGGGCUUu -3'
miRNA:   3'- guGCUUGCU-GCAGAGCGcGCUUGAAc -5'
24806 5' -51.7 NC_005284.1 + 27964 0.74 0.507109
Target:  5'- gGCucACGACGUCgaaugcugaagccgcUCGCGCGAugUUGc -3'
miRNA:   3'- gUGcuUGCUGCAG---------------AGCGCGCUugAAC- -5'
24806 5' -51.7 NC_005284.1 + 11633 0.73 0.549059
Target:  5'- gCGCGAacucgggGCGAUGUCgaugggugacaacgCGCGCGAGCUg- -3'
miRNA:   3'- -GUGCU-------UGCUGCAGa-------------GCGCGCUUGAac -5'
24806 5' -51.7 NC_005284.1 + 10137 0.7 0.678959
Target:  5'- gGCGcaGACGGCG-CUCGCGCGuACg-- -3'
miRNA:   3'- gUGC--UUGCUGCaGAGCGCGCuUGaac -5'
24806 5' -51.7 NC_005284.1 + 22869 0.7 0.690011
Target:  5'- gCGgGAAgGGCGUCgagCGcCGCGAGCUg- -3'
miRNA:   3'- -GUgCUUgCUGCAGa--GC-GCGCUUGAac -5'
24806 5' -51.7 NC_005284.1 + 15719 0.7 0.733529
Target:  5'- gCACGGGCGucUGUCgacgCGCGCGGugUg- -3'
miRNA:   3'- -GUGCUUGCu-GCAGa---GCGCGCUugAac -5'
24806 5' -51.7 NC_005284.1 + 28640 0.7 0.733529
Target:  5'- aGgGAGuucCGACGUCagCGCGCGAACa-- -3'
miRNA:   3'- gUgCUU---GCUGCAGa-GCGCGCUUGaac -5'
24806 5' -51.7 NC_005284.1 + 40157 0.69 0.765109
Target:  5'- aAUucACGGCGUCgagguagCGCGCGAGCg-- -3'
miRNA:   3'- gUGcuUGCUGCAGa------GCGCGCUUGaac -5'
24806 5' -51.7 NC_005284.1 + 54679 0.69 0.765109
Target:  5'- gGCGAA-GACGg--CGCGCGAGCg-- -3'
miRNA:   3'- gUGCUUgCUGCagaGCGCGCUUGaac -5'
24806 5' -51.7 NC_005284.1 + 14566 0.69 0.77537
Target:  5'- uGCGGACGugGUCUggcCGCgGCGAGg--- -3'
miRNA:   3'- gUGCUUGCugCAGA---GCG-CGCUUgaac -5'
24806 5' -51.7 NC_005284.1 + 43618 0.69 0.785478
Target:  5'- cCGCGcGCGGCGgccgCg-GCGCGAGCUg- -3'
miRNA:   3'- -GUGCuUGCUGCa---GagCGCGCUUGAac -5'
24806 5' -51.7 NC_005284.1 + 48516 0.69 0.785478
Target:  5'- gGCGGGCGugGgaauaCGCGCGAAUa-- -3'
miRNA:   3'- gUGCUUGCugCaga--GCGCGCUUGaac -5'
24806 5' -51.7 NC_005284.1 + 33112 0.68 0.805191
Target:  5'- aGCGGGCGAUGcugcCUCuGCGUGAACg-- -3'
miRNA:   3'- gUGCUUGCUGCa---GAG-CGCGCUUGaac -5'
24806 5' -51.7 NC_005284.1 + 51475 0.68 0.814773
Target:  5'- aGCGAugGGCGgugaUCGCGCGc-UUUGg -3'
miRNA:   3'- gUGCUugCUGCag--AGCGCGCuuGAAC- -5'
24806 5' -51.7 NC_005284.1 + 33158 0.68 0.824157
Target:  5'- gCACGcugcuCGGCGUCgagcgcggCGCGCGAGauCUUGc -3'
miRNA:   3'- -GUGCuu---GCUGCAGa-------GCGCGCUU--GAAC- -5'
24806 5' -51.7 NC_005284.1 + 46790 0.68 0.824157
Target:  5'- gCAUGuGCG-CGUCgucacucgcgCGCGCGAACUUc -3'
miRNA:   3'- -GUGCuUGCuGCAGa---------GCGCGCUUGAAc -5'
24806 5' -51.7 NC_005284.1 + 37189 0.67 0.842291
Target:  5'- gACGAGCGcgaccguguaacGCGUCUUGCGUucGCUg- -3'
miRNA:   3'- gUGCUUGC------------UGCAGAGCGCGcuUGAac -5'
24806 5' -51.7 NC_005284.1 + 25658 0.67 0.851022
Target:  5'- aACGGgaagGCGGCGcagccgUUCGCGCGAGCc-- -3'
miRNA:   3'- gUGCU----UGCUGCa-----GAGCGCGCUUGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.